Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0611
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    31   0.65 
At5g23630.1 68418.m02771 ATPase E1-E2 type family protein / halo...    29   2.0  
At4g03000.2 68417.m00408 expressed protein contains similarity t...    28   4.5  
At4g03000.1 68417.m00407 expressed protein contains similarity t...    28   4.5  

>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 436 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 329
           + C S + +  LL  P +  L  I+ QN P+VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At5g23630.1 68418.m02771 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase familiy protein
           similar to SP|O14072 Cation-transporting ATPase 4 (EC
           3.6.3.-) {Schizosaccharomyces pombe}; contains InterPro
           accession IPR001757: ATPase, E1-E2 type; contains Pfam
           profile PF00702: haloacid dehalogenase-like hydrolase
          Length = 1179

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 493 IDRPCFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTD 627
           +D  CF    +   +DQA  C   P + S   E+   H R  +TD
Sbjct: 73  VDFKCFVQFSKVNSIDQADACKVTPAKFSGSKEVVPLHFRSQMTD 117


>At4g03000.2 68417.m00408 expressed protein contains similarity to
           hypothetical proteins
          Length = 814

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 144 NASKAEASLAEPGKDMLTVEPRESGGPKQCDLTSRVSHSKRETRRR 7
           N+    AS A PGK++ +V      G K   LTS VS  K  + R+
Sbjct: 272 NSKNPHASGATPGKEVFSVSTASGEGTKSASLTS-VSDEKLVSCRK 316


>At4g03000.1 68417.m00407 expressed protein contains similarity to
           hypothetical proteins
          Length = 814

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 144 NASKAEASLAEPGKDMLTVEPRESGGPKQCDLTSRVSHSKRETRRR 7
           N+    AS A PGK++ +V      G K   LTS VS  K  + R+
Sbjct: 272 NSKNPHASGATPGKEVFSVSTASGEGTKSASLTS-VSDEKLVSCRK 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,906,108
Number of Sequences: 28952
Number of extensions: 284349
Number of successful extensions: 653
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)