Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0610
         (580 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   3.3  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   4.3  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   7.6  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 405 RYRN*PDKSLHQLRTAMHHH 346
           R RN PD S H LR+    H
Sbjct: 53  RLRNVPDNSFHFLRSLKKVH 72


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 213 KLKGIDGRAPPGVELRLNLTQHGKSHQARTPE 308
           KLK  + + PP  EL  N+    K  Q  +P+
Sbjct: 448 KLKTANNKRPPSTELGTNIYTSSK-RQRTSPQ 478


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 390 PDKSLHQLRTAMHHHPPNQERAVNLSIL 307
           P +S H+L T +  +PPN   AV  S L
Sbjct: 44  PLESNHKLVTFILKNPPNLNPAVQGSSL 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,334
Number of Sequences: 336
Number of extensions: 2941
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)