Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0610
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0130 - 963856-965454                                             28   4.7  
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341...    28   4.7  
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148...    28   4.7  

>07_01_0130 - 963856-965454
          Length = 532

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 375 HQLRTAMHHHPPNQERAVNLSILPVSGPGEISR 277
           H +   +   PPN     NL +LP+ GP ++ +
Sbjct: 195 HIINFLLRPEPPNTLSVDNLGVLPIIGPAKVGK 227


>06_02_0257 -
           13533689-13533714,13533799-13533925,13534013-13534121,
           13534193-13534272,13534758-13534979,13536070-13536318,
           13537032-13537484,13539834-13540556
          Length = 662

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 256 SSTPGGALPSIPLSFSFATILPPESKIFGFP 164
           S+  GG  P +  SF    IL P+SK++GFP
Sbjct: 73  SAAAGGGGPGMTTSFR---ILCPQSKVYGFP 100


>04_04_1192 + 31611804-31612113,31612235-31614058,31614098-31614842,
            31615047-31616835,31617136-31617163,31617343-31617794
          Length = 1715

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
 Frame = -3

Query: 356  CTTTHRIKKELLICQSFRCPGLVRFPVLSQIKPQLHS-WWCPSVNSFKFQLCNH 198
            C     +   L + +  +C  L  F VL  + P      W P++N  K   C H
Sbjct: 1008 CANLDLLSSCLEVLKITKCRKLTSFQVLQVLPPHCEEKTWLPNMNKLKVHSCPH 1061


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,648,753
Number of Sequences: 37544
Number of extensions: 409214
Number of successful extensions: 1125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)