Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0610
         (580 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               57   1e-08
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               57   1e-08
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   5e-08
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   7e-05
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   1e-04
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   6e-04
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   6e-04
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   6e-04
SB_34797| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_27909| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_4723| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_57065| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_23080| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)                   28   6.3  
SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 27/35 (77%), Positives = 30/35 (85%)
 Frame = +1

Query: 7   RESSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 111
           R ++AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 27/35 (77%), Positives = 30/35 (85%)
 Frame = +1

Query: 7   RESSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 111
           R ++AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 27/35 (77%), Positives = 30/35 (85%)
 Frame = +1

Query: 7   RESSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 111
           R ++AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 27/35 (77%), Positives = 30/35 (85%)
 Frame = +1

Query: 7   RESSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 111
           R ++AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 27/35 (77%), Positives = 30/35 (85%)
 Frame = +1

Query: 7   RESSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 111
           R ++AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 11  RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 45


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 26/33 (78%), Positives = 29/33 (87%)
 Frame = +1

Query: 13  SSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 111
           ++AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 30  TTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 62


>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = +1

Query: 22  KAFAKGVFINQERKLEVRRRLDTALVLTVN 111
           ++ AK VFINQERKLE RRR DT LVLT+N
Sbjct: 14  ESIAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 21/26 (80%), Positives = 23/26 (88%)
 Frame = +1

Query: 13 SSAKAFAKGVFINQERKLEVRRRLDT 90
          ++AKAFAK VFINQERKLE RRR DT
Sbjct: 3  TTAKAFAKNVFINQERKLEDRRRSDT 28


>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 20/30 (66%), Positives = 24/30 (80%)
 Frame = +1

Query: 22  KAFAKGVFINQERKLEVRRRLDTALVLTVN 111
           ++  + VFINQERKLE RRR DT LVLT+N
Sbjct: 14  ESICQDVFINQERKLEDRRRSDTVLVLTIN 43


>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 19/23 (82%), Positives = 20/23 (86%)
 Frame = +1

Query: 43  FINQERKLEVRRRLDTALVLTVN 111
           FINQERKLE RRR DT LVLT+N
Sbjct: 21  FINQERKLEDRRRSDTVLVLTIN 43


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 19/23 (82%), Positives = 20/23 (86%)
 Frame = +1

Query: 43  FINQERKLEVRRRLDTALVLTVN 111
           FINQERKLE RRR DT LVLT+N
Sbjct: 21  FINQERKLEDRRRSDTVLVLTIN 43


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 19/23 (82%), Positives = 20/23 (86%)
 Frame = +1

Query: 43  FINQERKLEVRRRLDTALVLTVN 111
           FINQERKLE RRR DT LVLT+N
Sbjct: 21  FINQERKLEDRRRSDTVLVLTIN 43


>SB_34797| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 578 RVRPRTSKGITD 543
           RVRPRTSKGITD
Sbjct: 40  RVRPRTSKGITD 51


>SB_27909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 578 RVRPRTSKGITD 543
           RVRPRTSKGITD
Sbjct: 138 RVRPRTSKGITD 149


>SB_4723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 578 RVRPRTSKGITD 543
           RVRPRTSKGITD
Sbjct: 70  RVRPRTSKGITD 81


>SB_57065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 578 RVRPRTSKGITD 543
           RVRPRTSKGITD
Sbjct: 70  RVRPRTSKGITD 81


>SB_23080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 578 RVRPRTSKGITD 543
           RVRPRTSKGITD
Sbjct: 70  RVRPRTSKGITD 81


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 206 CNHTPPGVQNLWFPGSCPPSHCSNVGGSLDD 114
           C+   PG  +   PGSC P +C N+ GSL D
Sbjct: 854 CDRCMPG--SYGGPGSCKPCNC-NMAGSLSD 881


>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1696

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 173 WFPGSCPPSHCSNVGGSLDDIFTVRTRAVS 84
           W+PG CPP  C+    +L +  TV +  +S
Sbjct: 80  WYPGYCPPHKCAG-RNTLQECCTVYSPEIS 108


>SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 460

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 197 TPPGV-QNLWFPGSCPPSHCSNVGG 126
           +P GV +N W PGS   S+C++ GG
Sbjct: 174 SPYGVDENSWSPGSSQSSNCTSPGG 198


>SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1153

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 281 PVLSQIKPQLHSWWCPSVNSFKFQLCNHTPPGVQNL 174
           P+++  + +  +  CP + S  F  CN T  GV+ L
Sbjct: 185 PIITDTECREIAGICPGLTSINFSYCNITDKGVEEL 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,923,611
Number of Sequences: 59808
Number of extensions: 410244
Number of successful extensions: 1034
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)