Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0610
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical pr...    31   0.78 
Z32673-1|CAA83585.1|  472|Caenorhabditis elegans transcription f...    28   5.5  
U41535-12|AAK67251.1|  438|Caenorhabditis elegans Abnormal cell ...    28   5.5  
AJ130957-1|CAA10262.1|  438|Caenorhabditis elegans LIN-26B protein.    28   5.5  

>Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical
           protein F45E6.4 protein.
          Length = 333

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 239 CPSVNSFKFQLCNHTPPGVQNLWFPGSCPPSHCSN 135
           CP  ++F F  C     G++  +FPG+CP   CS+
Sbjct: 203 CPCQHAFAFPAC-----GMETGFFPGTCPEMTCSS 232


>Z32673-1|CAA83585.1|  472|Caenorhabditis elegans transcription
           factor protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 237 APPGVELRLNLTQHGKSHQARTPEGLTD*QLFLD 338
           +P  +E +L  T H   HQ  TP  L+  Q  L+
Sbjct: 140 SPSSIEKQLQRTSHNPLHQLSTPHALSQLQKLLE 173


>U41535-12|AAK67251.1|  438|Caenorhabditis elegans Abnormal cell
           lineage protein 26 protein.
          Length = 438

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 237 APPGVELRLNLTQHGKSHQARTPEGLTD*QLFLD 338
           +P  +E +L  T H   HQ  TP  L+  Q  L+
Sbjct: 106 SPSSIEKQLQRTSHNPLHQLSTPHALSQLQKLLE 139


>AJ130957-1|CAA10262.1|  438|Caenorhabditis elegans LIN-26B protein.
          Length = 438

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 237 APPGVELRLNLTQHGKSHQARTPEGLTD*QLFLD 338
           +P  +E +L  T H   HQ  TP  L+  Q  L+
Sbjct: 106 SPSSIEKQLQRTSHNPLHQLSTPHALSQLQKLLE 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,629,119
Number of Sequences: 27780
Number of extensions: 296271
Number of successful extensions: 783
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)