Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0610
         (580 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putati...    28   5.2  
At3g62780.1 68416.m07053 C2 domain-containing protein contains s...    27   6.8  
At3g17465.1 68416.m02230 ribosomal protein L3 family protein           27   6.8  
At2g22790.1 68415.m02703 expressed protein ; expression supporte...    27   9.0  
At2g11620.1 68415.m01249 hypothetical protein                          27   9.0  
At1g53270.1 68414.m06037 ABC transporter family protein contains...    27   9.0  

>At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putative
           / LHCI type II, putative very strong similarity to PSI
           type II chlorophyll a/b-binding protein Lhca2*1
           GI:541565 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00504 chlorophyll A-B binding protein
          Length = 270

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 209 LCNHTPPGVQNLWFPGSCPP 150
           +C   PP  + LWFPGS PP
Sbjct: 57  VCEPLPPD-RPLWFPGSSPP 75


>At3g62780.1 68416.m07053 C2 domain-containing protein contains
           similarity to shock protein SRC2 [Glycine max]
           gi|2055230|dbj|BAA19769 ; contains Pfam profile
           PF00168:C2 domain
          Length = 298

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -3

Query: 281 PVLSQIKPQLHSWWCPSVNSFKFQLCNHTPPGVQNLWFPGSCPP 150
           PVLSQ+   + S   PSV SF +      PP    L  P   PP
Sbjct: 200 PVLSQLNGPVLSQLLPSVGSFSYNHVPCQPPIYPPLAQPEILPP 243


>At3g17465.1 68416.m02230 ribosomal protein L3 family protein
          Length = 324

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 58  RKLEVRRRLDTALVLTVNMSSSDPPTLLQWLGGQLPG 168
           RK+  R   D   V  V +   DP   L W+ GQ+PG
Sbjct: 234 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPG 270


>At2g22790.1 68415.m02703 expressed protein ; expression supported
           by MPSS
          Length = 325

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 272 SQIKPQLHSWWCPSVNSFKFQLCNHTPPGVQN 177
           S + P    ++   VN FK Q  NH  PG+ N
Sbjct: 23  SSVNPSSPVYYKTIVNHFKSQTGNHVSPGLTN 54


>At2g11620.1 68415.m01249 hypothetical protein 
          Length = 491

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 194 PPGVQNLWFPGSCPPSHCSNVGGS 123
           PPG  + WFP S P   C+N G S
Sbjct: 105 PPGANDHWFPYSDPA--CTNSGAS 126


>At1g53270.1 68414.m06037 ABC transporter family protein contains
           similarity to ABC transporter GI:10280532 from [Homo
           sapiens]
          Length = 590

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +3

Query: 123 RSADVTTMARRAASGKPKILDSGGSMVAKLKLKG---IDGRAPPGVELR 260
           RSA++T +A  + +GK  +L+     V+  K+ G   ++GR   G E R
Sbjct: 59  RSAEITAIAGPSGAGKTTLLEILAGKVSHGKVSGQVLVNGRPMDGPEYR 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,098,999
Number of Sequences: 28952
Number of extensions: 282882
Number of successful extensions: 715
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)