Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0606
         (622 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    25   0.39 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   0.89 
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    23   2.7  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   6.3  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   8.3  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 79  FTVLVVHCNVTYLTILDIHNKNIKKKLS 162
           F + +  CN++ LT++ IH    K+K+S
Sbjct: 274 FNIEMFLCNMSLLTVIPIHVWTSKEKIS 301


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +3

Query: 219 LNYFIFKLQSKPLL--RHRLE 275
           LNY   KLQS PLL  RH+++
Sbjct: 465 LNYISMKLQSFPLLSQRHQID 485


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 206 ITWEYFNHAYAY*NIESFFLIFLLCM 129
           + W+ F   YA  NI   F++ L C+
Sbjct: 61  LEWKSFRFVYAVYNIFGAFVMGLFCI 86


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +1

Query: 70  FLNFTVLVVHCNVTYLTILDI 132
           F  F   +V+C+VT+  + ++
Sbjct: 43  FCTFVAALVYCSVTFFALSEL 63


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 553 RNKTRACSRVKDRFFISLQLVY 618
           RN+  A  RVKD F  ++ L Y
Sbjct: 573 RNEQEAFDRVKDLFLEAVLLRY 594


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,912
Number of Sequences: 336
Number of extensions: 3284
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)