Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0606
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0801 + 25353708-25353914,25354307-25354429,25355035-253552...    29   3.0  
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792...    27   9.1  
11_02_0062 - 7909343-7909413,7909509-7910974,7911064-7912088,791...    27   9.1  
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302...    27   9.1  

>01_05_0801 +
           25353708-25353914,25354307-25354429,25355035-25355205,
           25355303-25355392,25355497-25355583,25355664-25355719,
           25355812-25355905,25356032-25356144,25356211-25356283,
           25356603-25356683,25356865-25356951,25357031-25357135,
           25357279-25357385,25357481-25357541,25357931-25358158,
           25359720-25360677,25360816-25360997,25361237-25361326,
           25361422-25361709,25361844-25362056,25362560-25362784
          Length = 1212

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 440 LSYIVNNLNRYPHLSSMAIKIRKKTI 517
           LSY +++  +YP+++SM I + KK +
Sbjct: 283 LSYAIDDKQKYPYIASMGIYVLKKDV 308


>11_02_0063 +
           7916048-7917135,7917225-7918690,7920177-7920238,
           7921808-7922407
          Length = 1071

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 349 AFYDIGNNDIPHKTTTFN*YFGELDLLERPAKLYCKQFE 465
           AF   G  +  H T +FN + G++D     A+ +C+ F+
Sbjct: 190 AFTSKGFTNWKHATGSFNEHVGKVDSFHNRARKHCEDFK 228


>11_02_0062 -
           7909343-7909413,7909509-7910974,7911064-7912088,
           7912300-7912809,7913418-7913441,7913617-7913673
          Length = 1050

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 349 AFYDIGNNDIPHKTTTFN*YFGELDLLERPAKLYCKQFE 465
           AF   G  +  H T +FN + G++D     A+ +C+ F+
Sbjct: 366 AFTSKGFTNWKHATGSFNEHVGKVDSFHNRARKHCEDFK 404


>01_07_0213 -
           42028941-42029055,42029444-42029480,42029876-42030244,
           42030332-42031201,42051574-42052891
          Length = 902

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 277 CSKRCRSNGFDCSLNIK 227
           C   C+S GFDCS ++K
Sbjct: 648 CRTCCKSRGFDCSTHVK 664


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,329,291
Number of Sequences: 37544
Number of extensions: 257377
Number of successful extensions: 388
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)