Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0606
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03590.1 68418.m00318 GDSL-motif lipase/hydrolase protein-rel...    33   0.20 
At5g12330.3 68418.m01451 lateral root primordium 1 (LRP1) identi...    27   7.6  
At5g12330.2 68418.m01450 lateral root primordium 1 (LRP1) identi...    27   7.6  
At5g12330.1 68418.m01449 lateral root primordium 1 (LRP1) identi...    27   7.6  

>At5g03590.1 68418.m00318 GDSL-motif lipase/hydrolase
           protein-related
          Length = 231

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +1

Query: 70  FLNFTVLVVHCNVTYLTILDIHNKNIKKKLS 162
           F+ F V  +HCN +Y  ++ +HN+++KK ++
Sbjct: 102 FVEFIVEDIHCNESYSDLVRLHNESLKKAVA 132


>At5g12330.3 68418.m01451 lateral root primordium 1 (LRP1) identical
           to lateral root primordium 1 (LRP1) [Arabidopsis
           thaliana] GI:882341; contains Pfam profile PF05142:
           Domain of unknown function (DUF702)
          Length = 226

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 277 CSKRCRSNGFDCSLNIK 227
           C   C+S GFDCS ++K
Sbjct: 128 CRTCCKSRGFDCSTHVK 144


>At5g12330.2 68418.m01450 lateral root primordium 1 (LRP1) identical
           to lateral root primordium 1 (LRP1) [Arabidopsis
           thaliana] GI:882341; contains Pfam profile PF05142:
           Domain of unknown function (DUF702)
          Length = 320

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 277 CSKRCRSNGFDCSLNIK 227
           C   C+S GFDCS ++K
Sbjct: 128 CRTCCKSRGFDCSTHVK 144


>At5g12330.1 68418.m01449 lateral root primordium 1 (LRP1) identical
           to lateral root primordium 1 (LRP1) [Arabidopsis
           thaliana] GI:882341; contains Pfam profile PF05142:
           Domain of unknown function (DUF702)
          Length = 320

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 277 CSKRCRSNGFDCSLNIK 227
           C   C+S GFDCS ++K
Sbjct: 128 CRTCCKSRGFDCSTHVK 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,276,850
Number of Sequences: 28952
Number of extensions: 233303
Number of successful extensions: 352
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)