Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0599
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   4.3  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   10.0 
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    24   10.0 
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    24   10.0 

>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -1

Query: 304 HNN*AKRVSH-GRSSDF*FWLIQTFEHNGIELS 209
           H N AKR+S  G S D  F  +QTFE+N I++S
Sbjct: 347 HYN-AKRISETGYSFDLCFSTLQTFENN-IQIS 377


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +2

Query: 104  VNDVIKLIS--LCQISSNARNHPSFSGI 181
            +++V+KL S  LCQ+ ++ R H   S I
Sbjct: 1496 LHNVVKLFSYSLCQVEASTRGHIKCSSI 1523


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 92  YYL*VNDVIKLISLCQISSNARNHPSFSGI 181
           Y L +NDV  L  +C+     ++H  F  I
Sbjct: 250 YKLTINDVRSLFYICEYEIAIKDHSDFCSI 279


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 64  RKLFYLWLIILFIS**CDQAYL--VMPNFIKCQKSSFVFGNLXLNYIS 201
           +K+F LWL++L +     Q +   V+P  I  Q+SS  + N  L YIS
Sbjct: 440 KKIFKLWLLVLKVIREGPQVHQSNVLPRVI--QQSS-EYANTQLQYIS 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,504,294
Number of Sequences: 5004
Number of extensions: 25624
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)