Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0599
         (400 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12218| Best HMM Match : PHK_AB (HMM E-Value=2.2e-07)                27   5.6  
SB_20934| Best HMM Match : PSI_8 (HMM E-Value=4.8)                     27   7.4  
SB_26150| Best HMM Match : DUF910 (HMM E-Value=5.6)                    26   9.8  
SB_59485| Best HMM Match : Dickkopf_N (HMM E-Value=0.2)                26   9.8  
SB_19198| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_12218| Best HMM Match : PHK_AB (HMM E-Value=2.2e-07)
          Length = 732

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -2

Query: 324 KWRVPFIITTELSA*VTAGPL--TFNFGL 244
           KWR P+ +TTELS   TA  +    NFGL
Sbjct: 256 KWRSPYAVTTELSWSTTAILIKCKANFGL 284


>SB_20934| Best HMM Match : PSI_8 (HMM E-Value=4.8)
          Length = 252

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 140 ISSNARNHPSFSGIXFLII 196
           +  N R HPSF  I FLII
Sbjct: 210 VMRNPREHPSFDDIFFLII 228


>SB_26150| Best HMM Match : DUF910 (HMM E-Value=5.6)
          Length = 187

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 227 VFKCLNKPKLKVRGPAVTHALSSVV 301
           + KCL + KL +  P +T  + SVV
Sbjct: 125 IVKCLERAKLSICWPGITQDIKSVV 149


>SB_59485| Best HMM Match : Dickkopf_N (HMM E-Value=0.2)
          Length = 450

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 119 KLISLCQISSNARNHP 166
           KL+S+C+ISS+A  HP
Sbjct: 17  KLLSVCKISSSAMYHP 32


>SB_19198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 119 KLISLCQISSNARNHP 166
           KL+S+C+ISS+A  HP
Sbjct: 17  KLLSVCKISSSAMYHP 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,661,620
Number of Sequences: 59808
Number of extensions: 171180
Number of successful extensions: 198
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)