Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0599
         (400 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15410.2 68418.m01803 cyclic nucleotide-regulated ion channel...    26   8.0  
At5g15410.1 68418.m01804 cyclic nucleotide-regulated ion channel...    26   8.0  

>At5g15410.2 68418.m01803 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC2) identical to
           cyclic nucleotide-gated cation channel GI:3894399 from
           [Arabidopsis thaliana]
          Length = 593

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 124 YLVMPNFIKCQKSSFVFGNLXLNYISNIMIILYHCV 231
           +LV+P  I+ +K   +   L L ++   +  +YHC+
Sbjct: 104 WLVVPKLIREEKVKLIMTILLLIFLFQFLPKIYHCI 139


>At5g15410.1 68418.m01804 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC2) identical to
           cyclic nucleotide-gated cation channel GI:3894399 from
           [Arabidopsis thaliana]
          Length = 726

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 124 YLVMPNFIKCQKSSFVFGNLXLNYISNIMIILYHCV 231
           +LV+P  I+ +K   +   L L ++   +  +YHC+
Sbjct: 237 WLVVPKLIREEKVKLIMTILLLIFLFQFLPKIYHCI 272


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,518,850
Number of Sequences: 28952
Number of extensions: 122216
Number of successful extensions: 188
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)