Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0586
         (447 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006762-10|AAF60556.1|  301|Caenorhabditis elegans Hypothetical...    29   2.0  
AF016685-16|AAG24152.2|  328|Caenorhabditis elegans Serpentine r...    27   4.7  

>AC006762-10|AAF60556.1|  301|Caenorhabditis elegans Hypothetical
           protein Y42G9A.1 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +1

Query: 127 SNRSKF*TSTFKFYLNPTSRSQTFLFI*TKKKNYAVIPKVIFSLINKIGSFNHLLM 294
           SN +KF  ST      P   SQ+ L   ++ +N+ V P  + SL+N     NH+ M
Sbjct: 99  SNINKFEPST-PLSFQPGFDSQSSLSTTSESQNFVVTPTTLSSLLNNHTRKNHIEM 153


>AF016685-16|AAG24152.2|  328|Caenorhabditis elegans Serpentine
           receptor, class x protein1 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 163 FYLNPTSRSQTFLFI*TKKKNYAVIPKVIFSLINKIGSFNHLLM 294
           FYL PT    +F+F   +  N  V    IF ++  IG+   ++M
Sbjct: 64  FYLAPTIILNSFIFSDERNGNLTVFISFIFMVLWYIGNITQIVM 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,990,412
Number of Sequences: 27780
Number of extensions: 106949
Number of successful extensions: 129
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)