Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0584
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.56 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.56 
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    28   1.3  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   2.3  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    26   5.2  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    26   5.2  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   6.9  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    25   9.1  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.1  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 319 SGCGRCRVWSMFVRYVRFSE 378
           +GCG+  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 503 ARKIRGRPENAGPDPVRNVRRFSRV 429
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 290 LRANPYSEVTDPFADFPYLHYSID*RLFTLETCCGYGYEPARHL 159
           L +     +  P   +P+   S+D R+F LE+  GY  EP   L
Sbjct: 144 LNSKTSESLKSPTLSYPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -3

Query: 190 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 62
           A  GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -3

Query: 382 LTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIH--LPTSLTYIILSTRGS 209
           +TR N+ + R   +  T   R  +K      S+PIL  +LR     PTS+ Y+   T   
Sbjct: 56  ITRLNQDDVRLFEKAKTVADR--TKDVAYSFSDPILSTQLRTPPPQPTSIRYLYFGTYRI 113

Query: 208 SPW 200
            PW
Sbjct: 114 KPW 116


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -2

Query: 581 SSELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAGPDPVRNVRRFS 435
           SS+++ E  S      +  +KP+R TA K + + ++ GP+  R +  F+
Sbjct: 335 SSDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARAMYSFA 383


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 356 TNIDQTRHRPHPLPVQTRHAPV 291
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 156 VEMSRRFVPISAAGLQGEEPLVDRIM*VREVGKWIRN 266
           ++ S  F PI   G++   PL+ R   V E  KW R+
Sbjct: 466 LQSSLSFTPIQ--GIELVNPLLQRQQKVEEANKWFRD 500


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = -2

Query: 380 NSLKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDPFADFP 240
           N L++    +  +    P P+P    +    R + +S +   F DFP
Sbjct: 228 NHLRQYLNQDFSRLHQSPSPIPNSNDNDSQTRRSSWSSIASAFNDFP 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,842
Number of Sequences: 5004
Number of extensions: 55898
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)