Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0584
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    31   0.76 
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969...    29   4.1  
07_03_0078 - 13147741-13148913                                         28   5.4  
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414     28   5.4  
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994...    28   7.1  
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462...    28   7.1  
01_06_0723 + 31501900-31502808,31502846-31503295                       28   7.1  
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853     28   7.1  
06_01_0350 + 2534422-2535615                                           27   9.4  

>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = -2

Query: 356 TNIDQTRH------RPHPLPVQTRHAPVLRANP 276
           T IDQ  H      + H +PVQ  H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356


>04_03_0732 +
           19095320-19095827,19095848-19096621,19096863-19096906,
           19097191-19097250
          Length = 461

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 332 RPHPLPVQTRHAPVLRANPYSEVTDP 255
           RP+PL V +RHA VL    +  V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 463 SGPAFSGLPRIFLAVSRVGFVSCAI 537
           SGP + G  R+F+A+S +G ++ ++
Sbjct: 223 SGPIYKGRERVFIAISDIGMLAVSL 247


>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
          Length = 520

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 235 YIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSG 110
           + +L+ RG  P +PAA     RRD   ++P  + Q P    G
Sbjct: 28  HAVLAVRGPRPLQPAASASFRRRDRWFHLPLHDPQPPPAAEG 69


>12_02_0854 +
           23697826-23698033,23699111-23699276,23699430-23699466,
           23699531-23700145
          Length = 341

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -3

Query: 358 ARTSTRPGTGRIRFPSKPDTPRSSE 284
           A TST PG GR R PS P TP  S+
Sbjct: 16  AATSTDPGRGRKRPPS-PSTPTPSD 39


>05_04_0162 +
           18645459-18645827,18645934-18646149,18646224-18646278,
           18646545-18646672,18647134-18647217,18648742-18648867,
           18648949-18649086
          Length = 371

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 346 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 260
           TRP TG+   P K D  RS   + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136


>01_06_0723 + 31501900-31502808,31502846-31503295
          Length = 452

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 268 KLRIHLPTSLTYIILSTRGSSPWRPAADMGTNR 170
           KLR     S T +    +GSSPW  A ++GT +
Sbjct: 387 KLRWFCEKSCTLLFTLGKGSSPWTFALNLGTKK 419


>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
          Length = 625

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -2

Query: 188 GYGYEPARHLHVHPSPEFSRSAES-IRTPPQMRCSSRSEPYLPSI 57
           G+   P+ H    P P+      S  R PP  R S RSE   P +
Sbjct: 26  GFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFPPL 70


>06_01_0350 + 2534422-2535615
          Length = 397

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 51 PWNSNAQAEKKTLPGPL 1
          PW S+A+ E+K LP PL
Sbjct: 42 PWRSSARLERKLLPPPL 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,782,913
Number of Sequences: 37544
Number of extensions: 419885
Number of successful extensions: 1553
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1553
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)