Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0584
(633 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical pr... 31 0.52
Z68752-1|CAA92981.1| 928|Caenorhabditis elegans Hypothetical pr... 31 0.91
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 29 3.7
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 29 3.7
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 29 3.7
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 29 3.7
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 29 3.7
AF043698-2|AAB97559.3| 700|Caenorhabditis elegans Hypothetical ... 28 6.4
Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical pr... 27 8.4
U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical pr... 27 8.4
>U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical
protein B0507.3 protein.
Length = 432
Score = 31.5 bits (68), Expect = 0.52
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = -3
Query: 340 PGTGRIRFPSKPDTPRSSEPILIPKLRIHLPTSLTYIILSTRGSSPWRPAADMGTNRRDI 161
P ++ SKP TP + P+L+P ++ LP + + T S P + +
Sbjct: 324 PNPAMVQKSSKPSTPIPAPPVLVP--QVELPAKTSSVSQKTTVSPPVEKVTPPPQHPPQL 381
Query: 160 STYIPHLNFQGPQ 122
S +P LN GPQ
Sbjct: 382 SLQVP-LN--GPQ 391
>Z68752-1|CAA92981.1| 928|Caenorhabditis elegans Hypothetical protein
T12G3.2a protein.
Length = 928
Score = 30.7 bits (66), Expect = 0.91
Identities = 24/85 (28%), Positives = 40/85 (47%)
Frame = -3
Query: 352 TSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIHLPTSLTYIILSTRGSSPWRPAADMGTN 173
T P ++R P+ PRSS+ L+ HLP S T + +S SP +P + + +
Sbjct: 845 TMISPPPAKVRPPAVDTYPRSSQFELVRSDSDHLPPSNTMMRVS---CSPPKPPSQLPSP 901
Query: 172 RRDISTYIPHLNFQGPQRVSGHRRK 98
+ T IPH+ G + H ++
Sbjct: 902 NQ---TTIPHMYNNGIPMIYEHHQQ 923
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -2
Query: 365 T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDP 255
T +++ID T H PHP+ VQ T+ V+ P V+ P
Sbjct: 904 TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVP 943
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 382 LTR*NEHNARTSTRPGTGRIRFPSKPDT 299
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 382 LTR*NEHNARTSTRPGTGRIRFPSKPDT 299
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 382 LTR*NEHNARTSTRPGTGRIRFPSKPDT 299
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 382 LTR*NEHNARTSTRPGTGRIRFPSKPDT 299
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>AF043698-2|AAB97559.3| 700|Caenorhabditis elegans Hypothetical
protein C54G6.2 protein.
Length = 700
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = -3
Query: 346 TRPGTGRIRFPSKPDTPRSSEPILIPKLRIHLPTSLTYIILSTRGSSPWRPAADMGT 176
+RP +GR R P+ P+ P+ E +P++ ++P + T I L ++ W P A T
Sbjct: 157 SRP-SGRRRLPATPNLPKHGE---LPQI-FNIPHANTLISLQLCVNNNWSPRAPGST 208
>Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical
protein R11A8.1 protein.
Length = 552
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -1
Query: 132 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 4
K+ +E D A N + FR I+PF P+ +N Q + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482
>U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical
protein C04E7.4 protein.
Length = 542
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 116 IRTPPQMRCSSRSEPYLPSIGFHGT 42
I T Q + SS +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,148,154
Number of Sequences: 27780
Number of extensions: 327404
Number of successful extensions: 958
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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