Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0584
         (633 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45560.1 68415.m05665 cytochrome P450 family protein                29   3.4  
At2g19150.1 68415.m02235 pectinesterase family protein contains ...    29   3.4  
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative...    28   4.5  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   4.5  
At1g07220.1 68414.m00768 expressed protein                             28   4.5  
At5g22390.1 68418.m02612 expressed protein                             27   7.8  
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical...    27   7.8  

>At2g45560.1 68415.m05665 cytochrome P450 family protein
          Length = 512

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +2

Query: 311 GREADAAGAGSGRCSCVMFVLAS*YFNIMRPQKLYIFNMTLAKIVLRFGLDPD 469
           GR+ +    G+GR  C    LA    ++M    LY F+  L K VL   LD D
Sbjct: 435 GRDYELTPFGAGRRICPGMPLAMKTVSLMLASLLYSFDWKLPKGVLSEDLDMD 487


>At2g19150.1 68415.m02235 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 339

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 97  ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 198
           I GG+  +    ++  EGCT + R G YP P +V
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217


>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 239

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 472 RVRIQSET*DDFRECHIKYIQFLRPH 395
           R+RIQ     DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 122 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 24
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At1g07220.1 68414.m00768 expressed protein
          Length = 507

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -2

Query: 236 LHYSID*RLFTLETCCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPY 69
           L Y +D  +   +T  G+  EP    H+ P   FS + +  +    ++CS  S PY
Sbjct: 37  LFYKVDDFIAQTKTLAGHNLEPTPW-HIFPRKSFSAATKHSQAYRILQCSYFSCPY 91


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 1  ERSGKSFLFCLSVRVPWNPIEG 66
          + S KSFL  LS   PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38


>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
           DNA Helicase [Arabidopsis thaliana] GI:11121449
          Length = 1188

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 164 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 75
           H H   +P+ S S  S+RTPP  R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,510,716
Number of Sequences: 28952
Number of extensions: 314321
Number of successful extensions: 986
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)