Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0567
         (591 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.36 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.6  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.6  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   3.4  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   3.4  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +3

Query: 249  SPLKLPRDPVRGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKP 374
            SPL  PR P   H  +     A   S + +G  R     +KP
Sbjct: 914  SPLTSPRQPAETHAGSPCRNSASPASSDRSGTPRSTNGDRKP 955


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 112 SSLKNHYFHCFITYSVGRK 168
           SS    +FHC+     GRK
Sbjct: 416 SSFFQQFFHCYCPIKFGRK 434


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 187 YYRPRTASAQPSK 149
           YYRPRT+  +P +
Sbjct: 232 YYRPRTSRTEPPR 244


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 337 ALFFDRCTAPVKLPAWQC 284
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 337 ALFFDRCTAPVKLPAWQC 284
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,165
Number of Sequences: 336
Number of extensions: 2978
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14830622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)