Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0567
(591 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa... 28 1.2
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 27 2.7
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 6.2
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 6.2
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 25 8.3
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 25 8.3
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 25 8.3
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce... 25 8.3
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|... 25 8.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.3
>SPAC637.08 |||iron-sulfur cluster assembly ATPase
Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 316 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTAY 450
Y+C + +S G L SED ++ W K GLI+ F + E+ Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 26.6 bits (56), Expect = 2.7
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -1
Query: 468 LYTKGSIGRAFAVPMRTEHLD-QASFCPFAPREVSVLAELALGHLR-YSLTDV-PPQSNS 298
L+ GS G F+ RT LD + + V++L ++ + + Y+L + PP +
Sbjct: 125 LFMVGSAGPLFSSTARTSRLDSRLPDGGIIAKPVALLPTPSVANSQEYTLDKLSPPSTAK 184
Query: 297 PPGSVLE 277
PP SV+E
Sbjct: 185 PPASVIE 191
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.4 bits (53), Expect = 6.2
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Frame = -1
Query: 330 SLTDVPPQSNSPPGSVLEPD-----HAGVLTATSVSATSPLCTLGTKHRAPADIIDRAPL 166
S+T P SP +EP HAG L TSVS T+ + D D
Sbjct: 587 SITPADPVPTSPKPLAIEPVKRKPVHAGNLEVTSVSDNKLGATVQVVEQKVDDKADALTK 646
Query: 165 PPN 157
PP+
Sbjct: 647 PPS 649
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 433 SPYAY*TSGSSQLLPFCSTRGF 368
SPYA+ T S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 25.0 bits (52), Expect = 8.3
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 212 PSVQSGDVAETLVAVKTPA*SGSRTLPGGEFDWGGTSVKE*RRCPKASSARTETSRG 382
P+V+S E+ +PA S SR P + T +E R AS ++E G
Sbjct: 1234 PNVKSAQKIESATRTPSPAISESRKKPSSKDTKIETPSREQSRSQTASPVKSEKDDG 1290
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 524 AATSQYPCGNFSGTSC 477
AA ++ CG +SGTSC
Sbjct: 334 AAAAKQCCGGYSGTSC 349
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 489 WHLLLKTLYTKGSIGRAFAVPMRTEH 412
+H + + L GSI FAVP++ EH
Sbjct: 398 FHGIAELLEILGSIINGFAVPLKEEH 423
>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 25.0 bits (52), Expect = 8.3
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Frame = -1
Query: 339 LRYSLTDVPPQS--NSPPGSVLEPDHA--GVLTATSVSATSPLCTLGTKHRAPADIIDRA 172
L YSLT V ++ G + D A G + +P T K R + R
Sbjct: 25 LNYSLTTVSDNVMIDTTRGEIEFSDSAVNGTMDIEGAPKFAPAKTSAEKKRGAKPQMRRV 84
Query: 171 PLPPNRVS 148
P+PP+R++
Sbjct: 85 PIPPHRMT 92
>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
2|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 225 VVTWRKRSSPLKLPRDPVRGHCQAGSLTGAVHLSKNNAGVL 347
VV WRK S L++ D +R H Q G L+ V L + + L
Sbjct: 352 VVDWRKNSDQLEVITDVLRDH-QVG-LSYVVKLMQEDLATL 390
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 497 NFSGTSC*KLFILKDR*AVLSQSL 426
N G S KLFI+KD V+SQ L
Sbjct: 3491 NIGGRSPQKLFIVKDSGQVMSQDL 3514
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,483,332
Number of Sequences: 5004
Number of extensions: 51028
Number of successful extensions: 138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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