Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0567
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 34 0.074
01_01_0613 - 4571689-4572348 30 1.6
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278... 29 2.8
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 3.7
07_01_0013 - 99952-100413,100534-100704 28 4.8
01_06_1105 - 34559694-34559852,34560298-34560312,34560451-345605... 28 4.8
05_03_0458 + 14280953-14281866,14281964-14282912 28 6.4
02_04_0220 - 21014225-21014386,21014492-21014572,21014739-210149... 27 8.5
01_06_1759 + 39689410-39689573,39689728-39689923,39690014-396901... 27 8.5
>03_05_1065 +
30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 34.3 bits (75), Expect = 0.074
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = -1
Query: 399 SFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLTATSVSATSPLC 220
+F P+ P LA + GH R+ + D + S G + D + + +VSA + LC
Sbjct: 371 AFHPYLP-----LATTSSGHRRFGMEDEIEEELSLAGIFNKGDRSYAVRRAAVSAYAALC 425
Query: 219 TLGTKHRAPADIIDR 175
+ H AP + DR
Sbjct: 426 AVLCAHEAPGGLPDR 440
>01_01_0613 - 4571689-4572348
Length = 219
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -1
Query: 354 LALGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLTATSVSATSPLCTLGTKHRAPADIID 178
L LGH YSL PP S + D GV +++S +AT+ +G + R+ +++D
Sbjct: 51 LELGHSVYSLPLPPPPSQPVVVAGGNNDQYGVSSSSSAAATT--SRIGFRTRSEVEVLD 107
>05_01_0356 +
2785410-2785670,2785843-2785960,2786800-2786891,
2787114-2787176,2787299-2787397,2787726-2787884,
2788420-2788491,2788567-2788699,2788813-2788877,
2789016-2789091,2789236-2789337,2789524-2789716,
2790576-2790654,2792939-2793007,2793261-2793311,
2793680-2793742,2793926-2794041,2794263-2794347,
2794898-2794957,2795594-2795639,2796011-2796084,
2796350-2796400,2796474-2796674,2796747-2796791,
2797063-2797156,2797226-2797371,2797510-2797739,
2798136-2798196,2798290-2798347,2799020-2799513
Length = 1151
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -1
Query: 486 HLLLKTLYTKGSIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSL--TDVP 313
+L+L LY RA AV + E L Q CP+ ++ LAE+ L +SL + P
Sbjct: 579 NLMLGKLYRISRNNRAAAVCYK-ECLRQ---CPYVFEAITALAEMGLSSKEFSLIFSQAP 634
Query: 312 PQSNSPPGSVLE 277
+ PG L+
Sbjct: 635 NRGGKAPGDSLD 646
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 229 TTLHAWNETPCARRYY 182
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>07_01_0013 - 99952-100413,100534-100704
Length = 210
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 276 PDHAGVLT-ATSVSATSPLCTLGTKHRAPADIIDRAP 169
P H G LT A SV TS L T GT H+A A +D+ P
Sbjct: 155 PSHVGYLTLAKSVVETSDLAT-GTLHQATA-ALDQQP 189
>01_06_1105 -
34559694-34559852,34560298-34560312,34560451-34560522,
34560695-34561549
Length = 366
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 318 VPPQSNSPPGSVLEPDHA-GVLTATSVSATSPLCTLGTKHRAPADIIDR 175
VP N PG++LEP ++ G ++ + S T G K D+ D+
Sbjct: 213 VPQPLNVGPGAILEPSYSDGQTSSGMIGGMSDSQTPGRKRGMSGDVADK 261
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/56 (35%), Positives = 23/56 (41%)
Frame = -1
Query: 315 PPQSNSPPGSVLEPDHAGVLTATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVS 148
PP SNS P S P LT TS ++SP P PLPP +S
Sbjct: 33 PPSSNSTPTSSTTPTVPPSLTTTSSPSSSPSSPPPLPPLQPTP----PPLPPTTLS 84
>02_04_0220 -
21014225-21014386,21014492-21014572,21014739-21014938,
21014999-21015157,21015248-21015377,21015520-21015673,
21015785-21015867,21015981-21016040,21016131-21016217
Length = 371
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 279 RGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKPRVEQKGKSWL 404
+GH +T A KNNAG L+ Q Q+ Q GK L
Sbjct: 212 KGHLWRSQITAAKEDKKNNAGALQLLQL-QEEACRQSGKDGL 252
>01_06_1759 +
39689410-39689573,39689728-39689923,39690014-39690103,
39690221-39690277,39690391-39690460,39690747-39690811,
39691408-39691462,39691704-39691831,39691919-39691950,
39692205-39692274,39692723-39692824,39692921-39693010,
39693084-39693232,39693620-39693731,39695332-39695412,
39695481-39695705,39695815-39695937,39696021-39696137
Length = 641
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 351 ALGHLRYSLTDVPPQSNSPPGSVLEP 274
ALGH+ L + P ++ PP ++P
Sbjct: 494 ALGHIELDLPEAPEKAPKPPAQAVDP 519
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,050,781
Number of Sequences: 37544
Number of extensions: 374559
Number of successful extensions: 1184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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