Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0567
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32679-2|CAA83592.1|  385|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z37139-5|CAA85490.1|  558|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   4.3  
Z49127-3|CAA88946.1|  523|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AL132860-16|CAB60516.1|  497|Caenorhabditis elegans Hypothetical...    27   10.0 
AL132860-15|CAB60499.1|  512|Caenorhabditis elegans Hypothetical...    27   10.0 

>Z32679-2|CAA83592.1|  385|Caenorhabditis elegans Hypothetical
           protein C05B5.2 protein.
          Length = 385

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 125 FFSDDRAKRSPTYATPLMSPYNARLESSSTGSFFPADSPK 6
           F+S+  A RS +   P+MS     + +++T +F PA S K
Sbjct: 46  FYSNITAPRSTSVLAPVMSSLEVYINTTTTSAFAPAQSIK 85


>Z37139-5|CAA85490.1|  558|Caenorhabditis elegans Hypothetical
           protein C14B1.9 protein.
          Length = 558

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
 Frame = -1

Query: 381 PREVSVLAELALGHLRYSLTDVPPQSNSPPGSVL-EPDHAGVLTATSVSATSPLCTLGTK 205
           P+++S+    ++G    +  ++P Q NSP  +V  E D    L A S + ++       K
Sbjct: 252 PKKISLDKPKSVGSPSNAHNEIPSQKNSPKSAVKNETDTEDALMAKSGNLSTAAVMFKNK 311

Query: 204 -HRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 94
            H      +D    P N    ET+  ++ +   ++ ++
Sbjct: 312 VHTLQCQFLDSHGNPQNTPDFETLSKILSEHFDKKELT 349


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -1

Query: 216 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 82
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


>Z49127-3|CAA88946.1|  523|Caenorhabditis elegans Hypothetical
           protein F13D12.4a protein.
          Length = 523

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -3

Query: 310 PVKLPAWQCPRTGSRGSFNGDERFRHVTTLHAWNETPCARRYYRPRTASAQP 155
           PV LP +    TGSRGSF GD  F     +  + +     +Y+       +P
Sbjct: 466 PVPLPMFSF--TGSRGSFLGDLNFYGKAGIQFYTQWKTVTQYWNESLTELKP 515


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 255 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNET 139
           T+ +   TSP  T+GT   APA++      P N  S+ T
Sbjct: 623 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTT 661


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 255 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNET 139
           T+ +   TSP  T+GT   APA++      P N  S+ T
Sbjct: 679 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTT 717


>AL132860-16|CAB60516.1|  497|Caenorhabditis elegans Hypothetical
           protein Y56A3A.17b protein.
          Length = 497

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
 Frame = -1

Query: 477 LKTLY-TKGSIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSN 301
           LK +Y     +     VP RTE+  ++S    APR+++  A    G  +  L      ++
Sbjct: 60  LKQIYKVDDDVAADMTVPRRTENSSESSGETVAPRKIA-KAVRKNGTPKNPLNSTVFAAS 118

Query: 300 SPPGSVLEPDHAGVLTATSVSATSPLCTLGTKHRAPA 190
           SP  +V      G ++  +    +PL        APA
Sbjct: 119 SPAATVASVPKFGDISVITKETPAPLAKTAEPLVAPA 155


>AL132860-15|CAB60499.1|  512|Caenorhabditis elegans Hypothetical
           protein Y56A3A.17a protein.
          Length = 512

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
 Frame = -1

Query: 477 LKTLY-TKGSIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSN 301
           LK +Y     +     VP RTE+  ++S    APR+++  A    G  +  L      ++
Sbjct: 60  LKQIYKVDDDVAADMTVPRRTENSSESSGETVAPRKIA-KAVRKNGTPKNPLNSTVFAAS 118

Query: 300 SPPGSVLEPDHAGVLTATSVSATSPLCTLGTKHRAPA 190
           SP  +V      G ++  +    +PL        APA
Sbjct: 119 SPAATVASVPKFGDISVITKETPAPLAKTAEPLVAPA 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,900,773
Number of Sequences: 27780
Number of extensions: 295552
Number of successful extensions: 880
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)