Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0567
(591 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 32 0.33
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 31 0.43
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote... 29 2.3
At3g03650.1 68416.m00368 exostosin family protein contains Pfam ... 29 2.3
At2g47390.1 68415.m05915 expressed protein 29 2.3
At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein si... 29 3.1
At5g23630.1 68418.m02771 ATPase E1-E2 type family protein / halo... 28 5.4
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 5.4
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 28 5.4
At5g05360.2 68418.m00577 expressed protein similar to unknown pr... 27 7.1
At5g05360.1 68418.m00578 expressed protein similar to unknown pr... 27 7.1
At3g62370.1 68416.m07006 expressed protein 27 7.1
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 7.1
At4g39070.1 68417.m05533 zinc finger (B-box type) family protein... 27 9.4
At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine... 27 9.4
At4g01210.1 68417.m00159 glycosyltransferase family protein 1 co... 27 9.4
At3g16260.1 68416.m02051 metallo-beta-lactamase family protein 27 9.4
At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138... 27 9.4
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 31.9 bits (69), Expect = 0.33
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = -1
Query: 330 SLTDVPPQSNSPPGSVLEPDHAGVLTATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRV 151
S T PP S +PPG P + ++ ATSP ++ K +P P PP
Sbjct: 169 SPTTSPPGSTTPPGGAHSPKSSSAVS----PATSPPGSMAPKSGSPVSPTTSPPAPPKST 224
Query: 150 S 148
S
Sbjct: 225 S 225
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 31.5 bits (68), Expect = 0.43
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = -1
Query: 258 LTATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYT 79
L V S LG +H PA +I+R P PP +S +++++F E +CY
Sbjct: 217 LDTEDVLLVSAKTGLGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYV 274
Query: 78 SHV 70
S V
Sbjct: 275 SVV 277
>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
beta-ketoacyl-CoA synthase - Simmondsia
chinensis,PID:g1045614
Length = 451
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 355 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 468
LS R W RAK L+Q+ TH+ E T+Y+S ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317
>At3g03650.1 68416.m00368 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 499
Score = 29.1 bits (62), Expect = 2.3
Identities = 26/87 (29%), Positives = 39/87 (44%)
Frame = -1
Query: 306 SNSPPGSVLEPDHAGVLTATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVV 127
S++ P VL DH V +T V PL + + +P + AP P NR ET + +
Sbjct: 37 SSTNPNRVL--DHISVSESTDV----PLIIIKNSNSSPQN---NAPKPQNREGAETEEPI 87
Query: 126 VFQRRSRETISHLCYTSHVSLQCQTRV 46
R +T S + +L+C RV
Sbjct: 88 KENRGGTKTESSMNQNRGETLRCIQRV 114
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = -1
Query: 264 GVLTATSVSATSPLCTLGTKHRAPA----DIIDRAPLPPNRVSNETMKVVVFQRRSRETI 97
G L+A++ + +GT +R P DI+D P+P S K++ +RR+ +
Sbjct: 90 GSLSASATATEDDELAIGTGYRLPPPEIRDIVDAPPVPALSFSPHRDKILFLKRRALPPL 149
Query: 96 SHL 88
+ L
Sbjct: 150 ADL 152
>At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase precursor GI:4097948 from
[Oryza sativa]
Length = 429
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -1
Query: 258 LTATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKV 130
LTA + T+ T+G + PA I L P+R++ + + +
Sbjct: 17 LTAIATPTTTSATTIGVTYSTPASISGTVQLSPDRIAEKVVSM 59
>At5g23630.1 68418.m02771 ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase familiy protein
similar to SP|O14072 Cation-transporting ATPase 4 (EC
3.6.3.-) {Schizosaccharomyces pombe}; contains InterPro
accession IPR001757: ATPase, E1-E2 type; contains Pfam
profile PF00702: haloacid dehalogenase-like hydrolase
Length = 1179
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 489 WHLLLKTLYTKGSIG-RAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTD 319
+H+L+ L+T S+ + F + +DQA C P + S E+ H R +TD
Sbjct: 61 FHILV-LLFTTWSVDFKCFVQFSKVNSIDQADACKVTPAKFSGSKEVVPLHFRSQMTD 117
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 180 DRAPLPPNRVSNETMKVVVFQRRSRET 100
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 231 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 94
S LC LG+ R PAD I+ L R+ M +V R S + I+
Sbjct: 54 SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98
>At5g05360.2 68418.m00577 expressed protein similar to unknown
protein (pir||T02500)
Length = 153
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 171 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 61
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At5g05360.1 68418.m00578 expressed protein similar to unknown
protein (pir||T02500)
Length = 163
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 171 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 61
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At3g62370.1 68416.m07006 expressed protein
Length = 361
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 265 GSFNGDERFRHVTTLHAWN 209
G NG +RF H+ ++AWN
Sbjct: 175 GEGNGGDRFGHLVDIYAWN 193
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 219 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 124
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
>At4g39070.1 68417.m05533 zinc finger (B-box type) family protein
salt-tolerance protein - Arabidopsis thaliana,
PID:e224078
Length = 242
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 408 DQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSP 295
D+A+ C R V +LA HLR+SLT P ++P
Sbjct: 20 DEAALCNGCDRHVHFANKLAGKHLRFSLTS-PTFKDAP 56
>At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine
aminohydrolase, putative identical to cytidine deaminase
homolog DesA [Arabidopsis thaliana] GI:4836443, cytidine
deaminase 8 (CDA8) [Arabidopsis thaliana] GI:5080714;
similar to cytidine deaminase (CDD) [Arabidopsis
thaliana] GI:3046700; contains Pfam profile PF00383:
Cytidine and deoxycytidylate deaminase zinc-binding
Length = 293
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -1
Query: 435 AVPMR--TEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVP 313
A PMR H++ S+ F P+ +S L A+ H R ++ P
Sbjct: 2 AQPMRFMLNHIETESYGAFTPQNLSPLINRAIPHTRAQISGSP 44
>At4g01210.1 68417.m00159 glycosyltransferase family protein 1
contains Pfam profile: PF00534 Glycosyl transferases
group 1
Length = 981
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -1
Query: 495 LFWHLLLKTLYTKGSIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRY 331
+F + LL LYT+ G + +P E + +A F P++ V+ + Y
Sbjct: 284 VFHNYLLPILYTEFDAGNFYVIPGSPEEVCKAKNLEFPPQKDDVVISIVGSQFLY 338
>At3g16260.1 68416.m02051 metallo-beta-lactamase family protein
Length = 937
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -1
Query: 471 TLYTKGSIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHL 337
+L++KGS+ ++ + D +S PF + VL E+ L HL
Sbjct: 719 SLFSKGSLMQSIYKRPSSPLTDNSSALPFLKKLKKVLGEMGLEHL 763
>At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'growth regulator protein -related' based on similarity
to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
tabacum], which, due to scienitific fraud was retracted.
Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
PMID:10400497.
Length = 568
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 568 ADIEGSKSNVAMNAWLPQ 515
AD+ GS NV M AW P+
Sbjct: 122 ADVNGSSHNVLMEAWKPR 139
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,307,963
Number of Sequences: 28952
Number of extensions: 282336
Number of successful extensions: 854
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -