Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0555
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   4.1  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   4.1  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    25   4.1  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.4  
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    25   7.2  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   7.2  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    25   7.2  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    24   9.5  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    24   9.5  

>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 217  SQMPRHLISDAHDGLTRFPLSLSTI 291
            S +  HL+SDA D   R PL+L  +
Sbjct: 960  STIKAHLLSDATDPFNRTPLTLDDV 984


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 220 GYLKRVIVTPAVYPRLLEFLHVDIQST 140
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 11  HDSVRAPFNGQLRTGTDKGN 70
           HD V+  F GQ+    DKGN
Sbjct: 61  HDGVKIEFIGQIENTYDKGN 80


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 214  LKRVIVTPAVYPRLLEFLHVDIQSTGQKSHC 122
            L + IVT + + RLLE+L  D  S  Q S C
Sbjct: 1789 LTKRIVTLSDHYRLLEYLLKDESSCSQASQC 1819


>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 402 YATPLMSPYNARLESSSTGSSFPADSP 322
           Y  P+ SPY++    SST SSF   SP
Sbjct: 132 YKKPV-SPYSSSSAVSSTSSSFDRTSP 157


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 261 NEIPTVPIYYLAKPQP 308
           NE+PTVPI Y  KP P
Sbjct: 274 NEVPTVPIRY--KPPP 287


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 399 ATPLMSPYNARLESSSTGSSFPADSPK 319
           +T    PY A  + ++TGSSF AD  K
Sbjct: 251 STTSSQPYGAFHQPATTGSSFVADKWK 277


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 411 SPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 310
           SPT      + +N  L  +S   S  ADSP  +P
Sbjct: 171 SPTSVERRFTEWNVPLRETSPSPSETADSPNKLP 204


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1014

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -1

Query: 229  EAFGYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGH 101
            E++G L RV++ P     ++EFL  DI   G+ S  +   EGH
Sbjct: 895  ESYGKLYRVVLHPEHEGAVVEFL--DIHDAGKASLAL---EGH 932


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,798,124
Number of Sequences: 5004
Number of extensions: 32926
Number of successful extensions: 87
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)