Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0555
(454 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0006 + 16257288-16259522 30 1.0
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 1.0
06_03_0854 + 25400855-25403741,25406174-25407708 29 1.7
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647... 29 1.7
01_01_1167 - 9301114-9301490,9302251-9302808,9303054-9303093 29 2.3
02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523... 28 3.1
12_02_0077 - 13288916-13289659,13289689-13289691 28 4.0
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 28 4.0
02_05_0726 - 31252210-31253166,31253667-31253840,31254320-312543... 27 7.1
01_01_1195 - 9567023-9567789,9567871-9568120 27 7.1
06_03_1023 - 26952195-26952635,26952723-26952934,26953038-269537... 27 9.3
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 1.0
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -2
Query: 420 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 268
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 238 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 137
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 420 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 295
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>04_04_0433 +
25163111-25163471,25163943-25164154,25164420-25164701,
25164794-25164916,25165511-25165664,25165754-25165965,
25166143-25166212,25166294-25166424
Length = 514
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 19 CTSAVQRSAQNWHGQGESDCLIKTKHCDGPRGC-*RNVISAQCS 147
CTS+ +R A W G G L HC P V+S +CS
Sbjct: 26 CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARAARVVSPRCS 69
>01_01_1167 - 9301114-9301490,9302251-9302808,9303054-9303093
Length = 324
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -1
Query: 256 HHARH*LDDEAF--GYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTR 110
H RH DE G+L+R ++ P R + L +D+QS ++ V+ R
Sbjct: 39 HRGRHYRGDEGLVAGWLRRTVIQPLETLRAMHKLALDVQSLKARALKVSER 89
>02_05_0042 +
25351648-25351724,25351983-25352010,25352311-25352373,
25352880-25352945,25353029-25353076,25353338-25353379,
25353499-25353714,25354066-25354188,25354352-25354564,
25354930-25355016,25355259-25355507,25356386-25356507,
25357135-25357225,25358467-25358882,25359489-25359609
Length = 653
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = -1
Query: 277 TVGISLIHHARH*LDDEAFGYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHR 98
T G+ ++ H + F + ++ V + RL++F+ VD+ + V+ R+G R
Sbjct: 10 TCGLRIMPDMEHQSEGRFFAWHIQIEVDHMLSERLMQFIDVDLHGVKAREKFVSVRKGTR 69
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 363 ESSSTGSSFPADSPKPVPLAVVSLDSR 283
++ S G S P DS + VP+ VV+L R
Sbjct: 3 DNQSLGKSLPKDSRRHVPVGVVALKKR 29
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 27.9 bits (59), Expect = 4.0
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -2
Query: 393 PLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDS 286
PL+ P AR SSTGSSFP S P ++ L S
Sbjct: 47 PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81
>02_05_0726 -
31252210-31253166,31253667-31253840,31254320-31254364,
31254463-31254573,31254669-31254746,31255170-31255234,
31255358-31255733,31256891-31257035,31257308-31257462,
31259036-31259182
Length = 750
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 411 SPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 310
SP Y P ++ N + S +T S P PK P
Sbjct: 159 SPKYVKPAVAKQNGEVVSRATKSDAPVSKPKVDP 192
>01_01_1195 - 9567023-9567789,9567871-9568120
Length = 338
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 378 YNARLESSSTGSSFPADSPKPVPLAVVSL 292
+ R SSS+ S PA +P P P VV+L
Sbjct: 157 FRRRKPSSSSASPAPAPAPPPPPQPVVAL 185
>06_03_1023 -
26952195-26952635,26952723-26952934,26953038-26953757,
26955042-26955735
Length = 688
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 270 PTVPIYYLAKPQPRERAWENQRGKKTLLSLTLV 368
P VPI P P +W + R K L+ + LV
Sbjct: 246 PEVPILASPSPSPLSSSWWSPRSLKILMIIALV 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,390,277
Number of Sequences: 37544
Number of extensions: 245218
Number of successful extensions: 770
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -