Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0555
(454 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 8e-14
SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35) 63 9e-11
SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5) 47 8e-06
SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 1e-04
SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 29 1.8
SB_36343| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_42414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_53612| Best HMM Match : SRCR (HMM E-Value=0) 28 4.2
SB_40461| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0) 27 9.6
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 27 9.6
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0) 27 9.6
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 73.3 bits (172), Expect = 8e-14
Identities = 35/43 (81%), Positives = 38/43 (88%)
Frame = -2
Query: 411 SPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR 283
+PTY+TPLMS + RLESSSTGSSFPAD KPVPLAVVSLDSR
Sbjct: 88 TPTYSTPLMSFHRVRLESSSTGSSFPADCAKPVPLAVVSLDSR 130
>SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)
Length = 521
Score = 63.3 bits (147), Expect = 9e-11
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = -3
Query: 152 HSEHWAEITLRQHPRGPSQCFVLIRQSDSPCPCQF 48
++EHWAEITLRQH PSQCFVLI+QSDSP CQF
Sbjct: 48 NNEHWAEITLRQHRFRPSQCFVLIKQSDSPSHCQF 82
>SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)
Length = 167
Score = 46.8 bits (106), Expect = 8e-06
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +2
Query: 140 SALNVNVKKFKQARVNGGSNYDSL 211
+ALNV VKKF QARVNGGSNYDSL
Sbjct: 28 AALNVKVKKFNQARVNGGSNYDSL 51
>SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +2
Query: 143 ALNVNVKKFKQARVNGGSNYDSL 211
ALNV VKKF QARVNG SNYDSL
Sbjct: 2 ALNVKVKKFNQARVNGWSNYDSL 24
>SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +2
Query: 137 PSALNVNVKKFKQARVNGGSNYDS 208
PSALNV VKKF QARVNGG +S
Sbjct: 31 PSALNVKVKKFNQARVNGGDPLES 54
>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 223 MPRHLISDAHDGLTRFP 273
MPRHLISDAH+ + P
Sbjct: 1 MPRHLISDAHEWINEIP 17
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 255 WINEIPTVPIYYLAKP 302
WINEIPTVPI +P
Sbjct: 12 WINEIPTVPIIEFLQP 27
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 67 ESDCLIKTKHCDGPRGC*RNVISAQCSE 150
E DC+ +KHCDG C C E
Sbjct: 73 EGDCIPLSKHCDGTWDCQHGTDEMDCQE 100
>SB_36343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 414 RSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 295
R PT P + Y +S TG +F AD P+ VP+ VS
Sbjct: 117 RRPTDDPPPLPDYVMVRFTSYTGPAFIADDPQVVPIVPVS 156
>SB_42414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 27.9 bits (59), Expect = 4.2
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +3
Query: 246 RA*WINEIPTVPIYYLAKPQPRERAW 323
RA W+ +P++ ++Y+ P R++ W
Sbjct: 168 RALWVFTLPSILVFYVTIPDCRKKTW 193
>SB_53612| Best HMM Match : SRCR (HMM E-Value=0)
Length = 409
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 420 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 310
A + T ATP SP R +++ SS SP P P
Sbjct: 366 ASSASTPATPDSSPKRKRTRQANSASSSQPSSPHPAP 402
>SB_40461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 363 ESSSTGSSFPADSPKPVPLAVVSLDS 286
+S GSS AD P+P L V+LD+
Sbjct: 279 DSCRGGSSASADEPEPAGLVAVTLDA 304
>SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0)
Length = 926
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +3
Query: 255 WINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSLTLVW 371
W N+I + YL P + + +Q+G+ L ++W
Sbjct: 762 WDNKIEAAKVVYLKSPGVKAQGSSSQKGQPQTLPPVVLW 800
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Frame = +1
Query: 76 CLIKTKHCDGPRGC*RNVISAQCSE----CQREEIQASAGK 186
C++ CDG R C N C C+ E Q S G+
Sbjct: 563 CILSRWRCDGDRDCADNSDEINCPNSSQYCKSSEYQCSTGE 603
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 64 GESDCLIKTKHCDGPRGC*RNV 129
G DCL K H +G RGC R +
Sbjct: 299 GSLDCLKKVFHSEGLRGCFRGM 320
>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2325
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 238 ISDAHDGLTRFPLSLSTI*RNHSQGNGLGRIS 333
ISD ++ T LS STI N G +GR+S
Sbjct: 146 ISDVNERPTNISLSASTITENTPPGTVIGRLS 177
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Frame = +1
Query: 76 CLIKTKHCDGPRGC*RNVISAQCSE----CQREEIQASAGK 186
C++ CDG R C N C C+ E Q S G+
Sbjct: 718 CILSRWRCDGDRDCADNSDEINCPNSSQYCKSSEYQCSTGE 758
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,122,861
Number of Sequences: 59808
Number of extensions: 273785
Number of successful extensions: 697
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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