Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0555
(454 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X04701-1|CAA28407.1| 705|Homo sapiens protein ( Human mRNA for ... 31 1.8
M14058-1|AAA51851.1| 705|Homo sapiens C1R protein. 31 1.8
BC035220-1|AAH35220.1| 705|Homo sapiens complement component 1,... 31 1.8
AB083037-1|BAC19850.2| 705|Homo sapiens r subcomponent of compl... 31 1.8
BC110451-1|AAI10452.1| 1042|Homo sapiens corin, serine peptidase... 29 7.4
AF133845-1|AAD31850.1| 1042|Homo sapiens corin protein. 29 7.4
BC126405-1|AAI26406.1| 1613|Homo sapiens low density lipoprotein... 29 9.8
BC117136-1|AAI17137.1| 1613|Homo sapiens low density lipoprotein... 29 9.8
AF074264-1|AAC33006.1| 1613|Homo sapiens LDL receptor-related pr... 29 9.8
AB209683-1|BAD92920.1| 1477|Homo sapiens low density lipoprotein... 29 9.8
>X04701-1|CAA28407.1| 705|Homo sapiens protein ( Human mRNA for
complement component C1r. ).
Length = 705
Score = 31.1 bits (67), Expect = 1.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 257 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 367
D + HCPY + A G +GE GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
>M14058-1|AAA51851.1| 705|Homo sapiens C1R protein.
Length = 705
Score = 31.1 bits (67), Expect = 1.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 257 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 367
D + HCPY + A G +GE GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
>BC035220-1|AAH35220.1| 705|Homo sapiens complement component 1, r
subcomponent protein.
Length = 705
Score = 31.1 bits (67), Expect = 1.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 257 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 367
D + HCPY + A G +GE GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
>AB083037-1|BAC19850.2| 705|Homo sapiens r subcomponent of
complement component 1 protein.
Length = 705
Score = 31.1 bits (67), Expect = 1.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 257 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 367
D + HCPY + A G +GE GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
>BC110451-1|AAI10452.1| 1042|Homo sapiens corin, serine peptidase
protein.
Length = 1042
Score = 29.1 bits (62), Expect = 7.4
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 52 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQAS 177
W CL T CDG C + CS CQ +E++ +
Sbjct: 622 WECPSNKQCLKHTVICDGFPDCPDYMDEKNCSFCQDDELECA 663
>AF133845-1|AAD31850.1| 1042|Homo sapiens corin protein.
Length = 1042
Score = 29.1 bits (62), Expect = 7.4
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 52 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQAS 177
W CL T CDG C + CS CQ +E++ +
Sbjct: 622 WECPSNKQCLKHTVICDGFPDCPDYMDEKNCSFCQDDELECA 663
>BC126405-1|AAI26406.1| 1613|Homo sapiens low density lipoprotein
receptor-related protein 6 protein.
Length = 1613
Score = 28.7 bits (61), Expect = 9.8
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1
Query: 64 GESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAGK 186
GE DC+ CDG C + C C + Q ++G+
Sbjct: 1259 GEIDCIPVAWRCDGFTECEDHSDELNCPVCSESQFQCASGQ 1299
>BC117136-1|AAI17137.1| 1613|Homo sapiens low density lipoprotein
receptor-related protein 6 protein.
Length = 1613
Score = 28.7 bits (61), Expect = 9.8
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1
Query: 64 GESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAGK 186
GE DC+ CDG C + C C + Q ++G+
Sbjct: 1259 GEIDCIPVAWRCDGFTECEDHSDELNCPVCSESQFQCASGQ 1299
>AF074264-1|AAC33006.1| 1613|Homo sapiens LDL receptor-related protein
6 protein.
Length = 1613
Score = 28.7 bits (61), Expect = 9.8
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1
Query: 64 GESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAGK 186
GE DC+ CDG C + C C + Q ++G+
Sbjct: 1259 GEIDCIPVAWRCDGFTECEDHSDELNCPVCSESQFQCASGQ 1299
>AB209683-1|BAD92920.1| 1477|Homo sapiens low density lipoprotein
receptor-related protein 6 variant protein.
Length = 1477
Score = 28.7 bits (61), Expect = 9.8
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1
Query: 64 GESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAGK 186
GE DC+ CDG C + C C + Q ++G+
Sbjct: 1123 GEIDCIPVAWRCDGFTECEDHSDELNCPVCSESQFQCASGQ 1163
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,343,482
Number of Sequences: 237096
Number of extensions: 1286131
Number of successful extensions: 2818
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2817
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3758237868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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