Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0555
(454 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 1.2
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 1.2
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 29 1.6
AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical ... 28 3.7
Z83238-6|CAB05800.1| 943|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p... 27 6.4
Z32679-2|CAA83592.1| 385|Caenorhabditis elegans Hypothetical pr... 27 6.4
U28971-1|AAA68376.2| 551|Caenorhabditis elegans Egg sterile (un... 27 6.4
U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical pr... 27 6.4
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 27 6.4
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 52 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 183
W+ G C+ + K CDG + C QCS+ + AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 52 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 183
W+ G C+ + K CDG + C QCS+ + AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 435 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 316
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 435 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 316
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical
protein Y53C10A.4 protein.
Length = 908
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = -2
Query: 432 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPAD-SPKP 316
+DD R P + + L PY + SSS+ SS P+D +P+P
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRP 724
>Z83238-6|CAB05800.1| 943|Caenorhabditis elegans Hypothetical
protein T08G3.7 protein.
Length = 943
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Frame = +3
Query: 282 IYYLAKPQPRERAW------ENQRGKKTLL 353
+YY KP ER W +NQ GK TLL
Sbjct: 589 LYYFGKPLDYERRWRYSLFLDNQDGKNTLL 618
>Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical
protein F36D3.5 protein.
Length = 1152
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Frame = +3
Query: 282 IYYLAKPQPRERAW------ENQRGKKTLL 353
+YY KP ER W +NQ GK TLL
Sbjct: 790 LYYFGKPLDYERRWRYSLFLDNQGGKNTLL 819
>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
protein F26D2.10 protein.
Length = 1213
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Frame = +3
Query: 282 IYYLAKPQPRERAW------ENQRGKKTLL 353
+YY KP ER W +NQ GK TLL
Sbjct: 851 LYYFGKPLDYERRWRYSLFLDNQDGKNTLL 880
>Z32679-2|CAA83592.1| 385|Caenorhabditis elegans Hypothetical
protein C05B5.2 protein.
Length = 385
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 438 FFSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPK 319
F+S+ A RS + P+MS + +++T + PA S K
Sbjct: 46 FYSNITAPRSTSVLAPVMSSLEVYINTTTTSAFAPAQSIK 85
>U28971-1|AAA68376.2| 551|Caenorhabditis elegans Egg sterile
(unfertilizable) protein1 protein.
Length = 551
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +1
Query: 43 AQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAGKR 189
A+N + + CL ++ CDG C C +C I+ +A K+
Sbjct: 422 AKNTQFKCDHKCLDSSRRCDGVWDCEDKSDEKGCDKCPSGTIKCAADKK 470
>U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical
protein R02F2.2 protein.
Length = 1182
Score = 27.1 bits (57), Expect = 6.4
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -2
Query: 390 LMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWESR 262
+++P +A SST SS P P+P A VS +R + SR
Sbjct: 1 MLNPNDADDSDSSTDSSPPVAVPRPKRSATVSPSTRNSFYNSR 43
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +1
Query: 67 ESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAGKR 189
++ CL ++ CDG C C +C + SA K+
Sbjct: 428 DNKCLESSRRCDGVWDCEDKSDEKGCDKCPSRSFKCSADKK 468
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,118,352
Number of Sequences: 27780
Number of extensions: 190516
Number of successful extensions: 540
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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