Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0555
(454 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot... 29 1.5
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 29 1.9
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 29 1.9
At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family p... 27 4.5
At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family p... 27 4.5
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 27 4.5
At5g62440.1 68418.m07837 expressed protein 27 7.8
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 27 7.8
At1g55540.1 68414.m06356 proline-rich family protein contains pr... 27 7.8
>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
similar to SP|P22418 Fructose-1,6-bisphosphatase,
chloroplast precursor (EC 3.1.3.11)
(D-fructose-1,6-bisphosphate 1-phosphohydrolase)
(FBPase) {Spinacia oleracea}; contains Pfam profile
PF00316: fructose-1,6-bisphosphatase
Length = 404
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 399 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 289
A+ + SP+N+ L S SS +D P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 28.7 bits (61), Expect = 1.9
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -1
Query: 202 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 92
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 33 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 28.7 bits (61), Expect = 1.9
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -1
Query: 202 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 92
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 32 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68
>At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family
protein contains Pfam PF03208: PRA1 family protein
Length = 209
Score = 27.5 bits (58), Expect = 4.5
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Frame = -2
Query: 411 SPTYATPLMSPYN--ARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWESR*SIMRVT- 241
SP A + P R SS + P+ V + SL S W ++RV+
Sbjct: 110 SPQLAAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSF-ALWYISSGLLRVSV 168
Query: 240 N*MTRHLATLRES*LLPPFTRACLNFFTLTFRALGRNH 127
+ HLAT+ + L P +A N F FRA+ RN+
Sbjct: 169 ALLIAHLATILHASLRTPNLKARFNTFREEFRAVWRNY 206
>At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family
protein contains Pfam PF03208: PRA1 family protein
Length = 209
Score = 27.5 bits (58), Expect = 4.5
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Frame = -2
Query: 411 SPTYATPLMSPYN--ARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWESR*SIMRVT- 241
SP A + P R SS + P+ V + SL S W ++RV+
Sbjct: 110 SPQLAAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSF-ALWYISSGLLRVSV 168
Query: 240 N*MTRHLATLRES*LLPPFTRACLNFFTLTFRALGRNH 127
+ HLAT+ + L P +A N F FRA+ RN+
Sbjct: 169 ALLIAHLATILHASLRTPNLKARFNTFREEFRAVWRNY 206
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 411 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 304
SPT + + SP A ++ + +S P +SPK P P++
Sbjct: 41 SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77
>At5g62440.1 68418.m07837 expressed protein
Length = 202
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 125 LRQHPRGPSQCFVLIRQSDS 66
+R HP S+CF L+R+ D+
Sbjct: 129 VRTHPMWKSRCFFLVREDDT 148
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 408 PTYATPLMSPYNARLESSSTGSSFPADSPKPVP 310
P P SP + R S GSS + SP P+P
Sbjct: 40 PQPPEPPESPPDLRRPEKSIGSSSSSSSPSPIP 72
>At1g55540.1 68414.m06356 proline-rich family protein contains
proline rich extensin domain, INTERPRO:IPR002965
Length = 915
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -2
Query: 405 TYATPLMSPYNARLESSSTGSS--FPADSP 322
T+ P +SP + + SSSTG S FP +P
Sbjct: 433 TFNLPALSPSSPEMVSSSTGQSSLFPPSAP 462
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,685,716
Number of Sequences: 28952
Number of extensions: 185370
Number of successful extensions: 502
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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