Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0554
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   5.6  
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...    25   5.6  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   5.6  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   5.6  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.4  

>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -2

Query: 252 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 103
           CD+       + S G L H + R  GG  +  + +  N+  SK E  +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652


>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +1

Query: 172 TTGRSAECMNQMSETAVPLVLSSITIATQAISRVKLTCL 288
           T  R+AE + +   + +  +++   ++  AI RVKL+C+
Sbjct: 251 TLVRAAEFVKEHGASKIYALVTHCVLSGDAIERVKLSCI 289


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 201 PNVRNCGSSRTEQYYYRNTSHQ*GK 275
           P V N GSSRT+ +Y R      GK
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAGK 110


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 180 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 55
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -2

Query: 252 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASK 130
           C    A  +  +S G +VHA  RAA    +  A  CL   K
Sbjct: 54  CLHRCAFLDLTKSRGRVVHACSRAALPRAIADASHCLEEKK 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,521
Number of Sequences: 5004
Number of extensions: 44613
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)