Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0554
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 30 1.4
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 1.9
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 29 2.5
03_05_0183 - 21681673-21682524 29 2.5
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 29 2.5
07_03_1086 + 23858419-23859423,23859527-23859610 28 4.3
09_02_0535 - 10346395-10346705,10347100-10347175,10348931-103490... 27 7.5
07_03_0626 + 20060013-20060273,20061017-20061274 27 7.5
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374... 27 10.0
08_02_1485 - 27466761-27467753 27 10.0
06_03_0836 - 25249491-25249511,25249883-25250050,25250721-252509... 27 10.0
>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -1
Query: 427 LWQPSVHSDVAF*SFDVGSSYHCEAKFAKRWIVHPSKGNVSWVR--PS*DRL 278
LW+ V S A S G+ C+ + W +HP ++ VR P DRL
Sbjct: 1109 LWKVEVPSLTAIRSLSTGTVLGCQVEKHMNWYLHPEHVSILLVRLMPQLDRL 1160
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 210 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 112
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 123 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRR 7
A+ A +GK + E E S+QCD T + +S RE +R
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSREKKR 468
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 420 SQAFIATLLFDPSMSALPIIAKQNSPS 340
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 481 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 374
YK F A G RKV GIT + PS+ D+AF S +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.3 bits (60), Expect = 4.3
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Frame = -2
Query: 252 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAESGKDMLT 88
CD N A + LVHAL AA A +A L A AS+ +G L
Sbjct: 135 CDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRAGAIPLL 194
Query: 87 VEPRESGGSK 58
V E+GG++
Sbjct: 195 VSLLETGGAR 204
>09_02_0535 -
10346395-10346705,10347100-10347175,10348931-10349070,
10349294-10349578,10349677-10349718,10350963-10351461,
10351557-10351723,10352128-10352412,10352695-10352836
Length = 648
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 190 ECMNQMSETAVPLVLSSI-TIATQAISRVKLTCLTTV*PSSRS 315
+C QM++ +P+ +SSI +AT + + K L +V P +S
Sbjct: 413 DCSIQMTKDGIPICMSSIDLLATTDVQQSKFCSLLSVIPEIQS 455
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 111 RLGWLRP*RRSGIIP 155
RLGWLRP R S ++P
Sbjct: 32 RLGWLRPSRLSAVVP 46
>09_02_0062 -
3742857-3743045,3744641-3744916,3745933-3745992,
3746554-3748102,3748183-3748418
Length = 769
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 358 EAKFAKRWIVHPSKGNVSWVRPS*DRLVLPY 266
EA A+ VHP+ + VR S DRL+ PY
Sbjct: 563 EAALAQAAAVHPNHPTLKIVRISEDRLLSPY 593
>08_02_1485 - 27466761-27467753
Length = 330
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 65 PPDSRGSTVSISLPDSARLASALEAFRHNPA 157
PP + G +S +P A LA++L + NPA
Sbjct: 39 PPSATGPVLSRDVPLDASLATSLRLYLPNPA 69
>06_03_0836 -
25249491-25249511,25249883-25250050,25250721-25250920,
25251000-25251324,25251981-25252045,25252231-25252552,
25252650-25252730
Length = 393
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 296 TVVRQVSFTLLMACVAIVILLSTRGTAVSDIWFMHS 189
++V Q SFT M +I LLS RGT S I + +
Sbjct: 311 SIVSQNSFTKEMTAYSIHSLLSVRGTFCSQIGLLEA 346
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,365,907
Number of Sequences: 37544
Number of extensions: 324867
Number of successful extensions: 848
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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