Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0554
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    31   0.51 
At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containi...    27   6.3  
At1g74010.1 68414.m08571 strictosidine synthase family protein s...    27   8.3  
At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138...    27   8.3  
At1g14740.1 68414.m01762 expressed protein                             27   8.3  

>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 432 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 325
           + C S + +  LL  P +  L  I+ QN P+VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 638

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 19/49 (38%), Positives = 21/49 (42%)
 Frame = -2

Query: 240 TAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDM 94
           T  Y    S G LVH L      A  PSA    N  +   SLAE+  DM
Sbjct: 13  TITYYHPMSIGLLVHPLSPHIPPASSPSASTAGNHHQRIFSLAETCSDM 61


>At1g74010.1 68414.m08571 strictosidine synthase family protein
           similar to strictosidine synthase [Rauvolfia
           serpentina][SP|P15324]; contains strictosidine synthase
           domain PF03088
          Length = 325

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 26/114 (22%), Positives = 44/114 (38%)
 Frame = -2

Query: 390 DPSMSALPIIAKQNSPSVGLFTHQKGT*AGLDRRETG*FYPTDGLCCDSNTAQYERNRSF 211
           D S   LP+  K++ P    F    G   G+   +   + P  G     + AQ   + + 
Sbjct: 23  DASFQKLPVPDKRSGPESFAFDSTGGFYTGVSGGKILKYVPGKGYV---DFAQITDSSNS 79

Query: 210 GHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCD 49
                ALG A  G     AG+ LN+   +  +A++   +  + P     +K  D
Sbjct: 80  AWCNGALGTAFAGKCGRPAGIALNSKTGDLYVADAPLGLHVISPAGGLATKLAD 133


>At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 568

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 374 ADIEGSKSNVAMNAWLPQ 427
           AD+ GS  NV M AW P+
Sbjct: 122 ADVNGSSHNVLMEAWKPR 139


>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -2

Query: 174 GAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK--QCDFTSRVSHSKRETRRRS 1
           G +L  + LC N+ K   SL + GK+++T     S   K  + DF +    +   ++R++
Sbjct: 67  GNELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYDDKWVERDFFNLREMNPNSSKRKA 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,003,418
Number of Sequences: 28952
Number of extensions: 244798
Number of successful extensions: 541
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)