Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0488
(584 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p... 29 1.8
Z66513-3|CAA91331.1| 186|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 27 7.4
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 27 7.4
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 27 7.4
AF040661-10|AAG24215.1| 426|Caenorhabditis elegans Hypothetical... 27 7.4
Z70037-4|CAA93877.1| 146|Caenorhabditis elegans Hypothetical pr... 27 9.8
U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF040661-11|AAG24210.1| 211|Caenorhabditis elegans Hypothetical... 27 9.8
AC025716-12|AAK39604.1| 704|Caenorhabditis elegans Hypothetical... 27 9.8
>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +1
Query: 97 DPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRQIPRMVAS 276
+ GL R + + ET +K H P S +V + R A A F Q PR+
Sbjct: 789 ESRGLHRHEEKAQIETSTIKIH---EPSSPPPSVHKFGAVNTRAAPAPVQFMQTPRIAVK 845
Query: 277 HHRPLG 294
H P G
Sbjct: 846 IHEPTG 851
>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +1
Query: 97 DPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRQIPRMVAS 276
+ GL R + + ET +K H P S +V + R A A F Q PR+
Sbjct: 789 ESRGLHRHEEKAQIETSTIKIH---EPSSPPPSVHKFGAVNTRAAPAPVQFMQTPRIAVK 845
Query: 277 HHRPLG 294
H P G
Sbjct: 846 IHEPTG 851
>Z66513-3|CAA91331.1| 186|Caenorhabditis elegans Hypothetical
protein F54D5.4 protein.
Length = 186
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 142 TRL-VKSHCLEPPDSRGSTVSISLPD-SARLASALEAFRQIPRMVASHHRPLGRVHEPNV 315
TRL K +C E + G+ + D S + +E R+I ++A H R +PN
Sbjct: 44 TRLNTKYYCFEGCLNTGTALQNCKVDMSGNNGTRIERSREIKEVIALHQLARQRDEDPNA 103
Query: 316 RNC 324
++C
Sbjct: 104 KSC 106
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -3
Query: 555 VTTGITGL----WQPSVHSELLFDPSMSALPIIAKQNSPSV 445
VTTG++ L W P+ + DP+ S P+ A+ S SV
Sbjct: 2255 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2295
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -3
Query: 555 VTTGITGL----WQPSVHSELLFDPSMSALPIIAKQNSPSV 445
VTTG++ L W P+ + DP+ S P+ A+ S SV
Sbjct: 2277 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2317
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical protein
R11A8.7d protein.
Length = 1427
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -3
Query: 555 VTTGITGL----WQPSVHSELLFDPSMSALPIIAKQNSPSV 445
VTTG++ L W P+ + DP+ S P+ A+ S SV
Sbjct: 1098 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 1138
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical protein
R11A8.7c protein.
Length = 1405
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -3
Query: 555 VTTGITGL----WQPSVHSELLFDPSMSALPIIAKQNSPSV 445
VTTG++ L W P+ + DP+ S P+ A+ S SV
Sbjct: 1076 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 1116
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -3
Query: 555 VTTGITGL----WQPSVHSELLFDPSMSALPIIAKQNSPSV 445
VTTG++ L W P+ + DP+ S P+ A+ S SV
Sbjct: 2255 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2295
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -3
Query: 555 VTTGITGL----WQPSVHSELLFDPSMSALPIIAKQNSPSV 445
VTTG++ L W P+ + DP+ S P+ A+ S SV
Sbjct: 2277 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2317
>AF040661-10|AAG24215.1| 426|Caenorhabditis elegans Hypothetical
protein W10G11.6 protein.
Length = 426
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -1
Query: 335 REEPQFRTFGSCTRPSGRWCEATIRGICLNASKAEASLA 219
R EP +R F RPSG WC G +A+KA+A A
Sbjct: 255 RCEPGWRFFN---RPSGGWCIRVFTG--FHAAKADAEAA 288
>Z70037-4|CAA93877.1| 146|Caenorhabditis elegans Hypothetical
protein T27D12.3 protein.
Length = 146
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 296 RPSGRWCEATIRGICLNASKAEAS 225
RPSG WC G+ L ++ EAS
Sbjct: 35 RPSGPWCVKLFVGLYLQGNRNEAS 58
>U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical
protein K09H11.1 protein.
Length = 985
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 32 YIRTFGAVMHVLRKKPIASISAIQMGFDVASRVLNA 139
YIRT +VLRKKP S+ D +++NA
Sbjct: 264 YIRTVRGSQYVLRKKPSGSLLPKAHQVDREFKIMNA 299
>AF040661-11|AAG24210.1| 211|Caenorhabditis elegans Hypothetical
protein W10G11.15 protein.
Length = 211
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = -1
Query: 296 RPSGRWCEATIRGICLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHS 132
RPSG WC G + AE S G + ++ R Q ++++ S
Sbjct: 49 RPSGGWCMRVFEGFNAAKTDAEKSCKSVGSTLSGIQNRNEALYIQTALLAQIARS 103
>AC025716-12|AAK39604.1| 704|Caenorhabditis elegans Hypothetical
protein Y39G10AR.15 protein.
Length = 704
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 235 ALEAFRQIPRMVASHHRPLGRVHEPN 312
A + Q+PR++ HRPL ++H N
Sbjct: 406 ARDGTEQVPRVLIQMHRPLKQMHSGN 431
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,441,229
Number of Sequences: 27780
Number of extensions: 272706
Number of successful extensions: 818
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -