Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0488
         (584 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    28   5.3  
At1g14740.1 68414.m01762 expressed protein                             28   5.3  
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    27   7.0  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   7.0  
At5g18000.1 68418.m02111 transcriptional factor B3 family protei...    27   9.2  

>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 287 GRWCEATIRGICLNASKAEASLAESGKDMLTVEPRESGGSKQCD 156
           G W +  +       +K + ++ + GKD LT+E  E  G+ + D
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329


>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = -1

Query: 347 YCSVREEPQFRTFGSCTRP-SGRWCEATIRGICLNASKAEASLAESGKDMLTVEPRESGG 171
           + +VR       F S + P SG   E T+  +C N+ K   SL + GK+++T     S  
Sbjct: 46  FLNVRSNNLDGGFSSKSSPRSGN--ELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYD 103

Query: 170 SK--QCDFTSRVSHSKRETRRRS 108
            K  + DF +    +   ++R++
Sbjct: 104 DKWVERDFFNLREMNPNSSKRKA 126


>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 10  EPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 162
           +PR R  LY D  +  + + K+T S+D+   NG +   S+ E   R+ + H
Sbjct: 149 KPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 238 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 98
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


>At5g18000.1 68418.m02111 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 307

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +1

Query: 466 RNDRKSRHRRIKKQLAMNAWLPQASYPC 549
           R +RKS ++ +KK+  + +W  ++S+PC
Sbjct: 135 REERKSIYKDVKKEEEIESW-SESSHPC 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,870,878
Number of Sequences: 28952
Number of extensions: 264553
Number of successful extensions: 692
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)