Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0483
(424 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 0.51
02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349... 30 0.88
07_03_0846 - 21983581-21986055 29 1.2
05_01_0314 - 2466617-2467060 29 2.0
06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-38... 28 2.7
09_04_0407 + 17345382-17345579,17345711-17346235 28 3.6
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 3.6
05_04_0281 + 19779156-19779805,19781303-19781475,19781909-197821... 27 4.7
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 4.7
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171... 27 4.7
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 27 6.2
01_06_1777 + 39818212-39819696 27 6.2
01_05_0118 + 18335065-18335553 27 6.2
11_07_0014 + 27379941-27379974,27381975-27382033,27382561-273827... 27 8.2
11_06_0179 + 20952070-20955228 27 8.2
09_02_0267 - 6485428-6485895,6488255-6488303,6488466-6488469,648... 27 8.2
06_01_1170 - 10002650-10004122 27 8.2
06_01_0655 + 4742267-4742531,4743313-4744136 27 8.2
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 0.51
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -2
Query: 234 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 100
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>02_01_0486 -
3495792-3496034,3496862-3496934,3497128-3497422,
3497585-3497759,3498349-3498795,3499994-3500053
Length = 430
Score = 29.9 bits (64), Expect = 0.88
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -2
Query: 303 PRPSGRWCEATIRGIMLNAS-KAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHS 136
PRP+ +++IRGI+ S KA++SL + + +L + S +Q T+ S S
Sbjct: 73 PRPNSTRTKSSIRGIIPQRSFKAKSSLQDGDQTILLIPDTPSSSGQQVKATTSRSFS 129
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 92 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 241
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_01_0314 - 2466617-2467060
Length = 147
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 319 TFGSCTSAERPVVRSYHPRDYAE 251
T + T+A+RP SYHP + AE
Sbjct: 108 TLSAATAADRPACASYHPAEDAE 130
>06_01_0039 -
386576-387098,387173-387468,387744-388067,388165-388276,
388355-388482,388914-389048,389122-389250,389620-389787,
389897-390019,390099-390227,390543-390866,390946-392901
Length = 1448
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 294 SAEVHEPNVRNCGSSRTEQYYYRNDKPSVG 383
S+E H+ + + GSS + Q Y+ +PSVG
Sbjct: 432 SSEDHQASYKGFGSSTSHQSVYKGFEPSVG 461
>09_04_0407 + 17345382-17345579,17345711-17346235
Length = 240
Score = 27.9 bits (59), Expect = 3.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 286 VVRSYHPRDYAERL*GRSQPSRIRQGYAHCGAP 188
+ + YHP+ A +S S IR+ YAHC P
Sbjct: 4 LAQEYHPKLPATNHYCKSLSSLIRETYAHCHVP 36
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 3.6
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 243 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 70
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 69 TRASR 55
TRA+R
Sbjct: 64 TRAAR 68
>05_04_0281 +
19779156-19779805,19781303-19781475,19781909-19782162,
19782265-19782339,19782431-19782538,19782914-19783031,
19783347-19783482,19785623-19785797,19786333-19786860,
19787624-19787836,19787850-19787882
Length = 820
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 247 GVQHNPADGSFAPPAARPRCMNQMSETAVPLVLSS 351
G++ +PA+ + PPA P+ +E A P L S
Sbjct: 50 GIEADPAEAALLPPAPSPQPAEAEAEAAGPASLPS 84
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 215 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 111
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>01_07_0124 +
41212728-41212922,41215156-41215210,41215336-41217128,
41217363-41217521,41217883-41218054,41218173-41218471,
41219060-41219368
Length = 993
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +2
Query: 74 KKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 253
KKT ++ + P+ R + + + +V S C D G+ ++ + R+ASA++AF
Sbjct: 566 KKTMAVVIASPSAGGRPRAFLKGASEVVLSRCSLVLDGTGNVEKLTDAKAKRVASAIDAF 625
Query: 254 S 256
+
Sbjct: 626 A 626
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 27.1 bits (57), Expect = 6.2
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 183 SGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 85
S G+ Q T R HS E RRRS R +L
Sbjct: 212 SAGTDQMPNTPRSKHSATEQRRRSKINDRFQLL 244
>01_06_1777 + 39818212-39819696
Length = 494
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 185 SRGSTVSISLPDSARLASALEAFSIIPRMVASHHRP 292
+R T SI + + ++A I+ RMV HHRP
Sbjct: 399 TRKETFSILISGLCSESRFIDAAQIMERMVKGHHRP 434
>01_05_0118 + 18335065-18335553
Length = 162
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2
Query: 225 AESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSR 97
A+ G + V P +GG+++ + ++ K T RR+ FG+R
Sbjct: 18 AQDGHRLPDVAPA-AGGTREPEHARLIARRKESTYRRTAFGNR 59
>11_07_0014 +
27379941-27379974,27381975-27382033,27382561-27382782,
27383727-27383810,27385054-27385131,27385716-27385832,
27385956-27386019,27386399-27386402,27386565-27386613,
27388973-27389440
Length = 392
Score = 26.6 bits (56), Expect = 8.2
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 59 DARVKKKTDSIDLRDPNGLRRRVSRFE-CETRLVKSHCLEPPDSRGSTVSISLPDSARLA 235
D KKK S + N R+RV+ FE +R + L S +T +LPD+ L
Sbjct: 253 DGEPKKKPTSTPSQKRNNKRKRVTAFERLWSRAGELRILRAMASHTNTHRSTLPDTCDLF 312
Query: 236 SAL 244
+ L
Sbjct: 313 ATL 315
>11_06_0179 + 20952070-20955228
Length = 1052
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 348 AQYERNRSFGHLVHAPRPSGRW 283
AQYE +F HLVH + W
Sbjct: 914 AQYETTDTFSHLVHTGQRDSTW 935
>09_02_0267 -
6485428-6485895,6488255-6488303,6488466-6488469,
6488849-6488912,6489036-6489152,6489737-6489814,
6491058-6491141,6492086-6492307,6492835-6492893,
6494894-6494927
Length = 392
Score = 26.6 bits (56), Expect = 8.2
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 59 DARVKKKTDSIDLRDPNGLRRRVSRFE-CETRLVKSHCLEPPDSRGSTVSISLPDSARLA 235
D KKK S + N R+RV+ FE +R + L S +T +LPD+ L
Sbjct: 253 DGEPKKKPTSTPSQKRNNKRKRVTAFERLWSRAGELRILRAMASHTNTHRSTLPDTCDLF 312
Query: 236 SAL 244
+ L
Sbjct: 313 ATL 315
>06_01_1170 - 10002650-10004122
Length = 490
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 185 SRGSTVSISLPDSARLASALEAFSIIPRMVASHHRPLGRG 304
S GS + P +A LA+ALE + A H PL G
Sbjct: 298 SFGSMAQLQPPHAAALAAALERTRVAFVWAAGSHTPLPEG 337
>06_01_0655 + 4742267-4742531,4743313-4744136
Length = 362
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 92 DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLAS 238
++RDP G+R + F +++ E RG ++ PD A +AS
Sbjct: 129 EIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVAS 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,389,189
Number of Sequences: 37544
Number of extensions: 261381
Number of successful extensions: 838
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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