Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0483
(424 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.69
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.91
SB_40863| Best HMM Match : RVT_1 (HMM E-Value=0.00014) 29 1.6
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_15006| Best HMM Match : Stig1 (HMM E-Value=2) 28 3.7
SB_19015| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11) 27 4.8
SB_12162| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_57377| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14) 27 8.5
>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 30.3 bits (65), Expect = 0.69
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 128 SRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFSIIPR 268
+R+ E +L + H L PP +S SA +SA F IPR
Sbjct: 35 ARYRAEAQLNRRHGLSPPTPPEGISPLSSSSSASSSSAASPFHTIPR 81
>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1560
Score = 29.9 bits (64), Expect = 0.91
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Frame = +2
Query: 83 DSIDLRDPNGLRRRVSRFECETRLVKSHCLE---------PPDSRGSTVSISLPDSARLA 235
DS ++DP G+RR++ F E R V L+ PP+S S V RL
Sbjct: 101 DSPPIKDPPGVRRKIEEFTIEQRAVNKRRLDLLDTLRKMKPPNSTKSAVYEWHDTLIRLC 160
Query: 236 SALEAFSI 259
LE S+
Sbjct: 161 KELEELSM 168
>SB_40863| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
Length = 1236
Score = 29.1 bits (62), Expect = 1.6
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +2
Query: 47 LRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSA 226
LRS RVKKKTD + + + ++C++ + P G +I+ P S
Sbjct: 1121 LRSTSYRVKKKTDCYKVPSEVPDKTPTAAYDCDSSADEDDTPATPAPPGIPTAITDPPSR 1180
Query: 227 RLASALEAFSIIPRMVASHHRP 292
+ +A + R + S H P
Sbjct: 1181 DVPPQSDADASETRAMDSSHCP 1202
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -2
Query: 198 VEPRESGGSK-QCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRS 43
+E +S G + +CD TSR+S R F ++R++ F + S RS
Sbjct: 2037 IEDLDSFGQRDRCDGTSRISRQSRSRIETDVFPTKRNLSHSFKDVKTSESERS 2089
>SB_15006| Best HMM Match : Stig1 (HMM E-Value=2)
Length = 991
Score = 27.9 bits (59), Expect = 3.7
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Frame = -2
Query: 354 NTAQYERNRSFGHLV--HAPRPSGRWCEATIRGIMLNASKAEASLAESGKDMLTVEPRES 181
N+ Y+++R+F L H PR + T R I E+ + P ES
Sbjct: 755 NSVTYDQSRNFAVLDERHVPRDATATPLGTSRDIPTAVYSKESRSTSRDIPLAVYLPNES 814
Query: 180 GGSKQCDFTSRVSHSKRETRRRSP 109
G S + T+ S R T R P
Sbjct: 815 GSSNRDIPTAVYSKESRSTSRDIP 838
>SB_19015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 9 IPSPDIALSYIRTFGAVMHVLRKKPIASISAIQMGF 116
IP+ I +SY R +G H LR+ IAS+ + GF
Sbjct: 193 IPAIIICISYGRIYGVAKHQLRQ--IASLDRTRRGF 226
>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
Length = 1692
Score = 27.5 bits (58), Expect = 4.8
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Frame = +2
Query: 104 PNGLRRRVSRFECET----RLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 253
PN LR R S F L CL PP++ G I L D + LA A+
Sbjct: 1246 PNDLRGRWSDFFSNLFQLEHLELDRCLRPPNAEGKPWLIILSDGSDLAYGFAAY 1299
>SB_12162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 26.6 bits (56), Expect = 8.5
Identities = 18/79 (22%), Positives = 37/79 (46%)
Frame = -2
Query: 354 NTAQYERNRSFGHLVHAPRPSGRWCEATIRGIMLNASKAEASLAESGKDMLTVEPRESGG 175
+TA E++ +F G + T + + K + + AE+G D+L
Sbjct: 184 DTANAEKSGNFKMDTAKSEIGGNFKMDTAKSEIGGNFKMDTANAENGVDVLKTSASMVFN 243
Query: 174 SKQCDFTSRVSHSKRETRR 118
++Q TS++ ++++TRR
Sbjct: 244 NEQFSATSQIKGTEKDTRR 262
>SB_57377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 264
Score = 26.6 bits (56), Expect = 8.5
Identities = 22/83 (26%), Positives = 39/83 (46%)
Frame = +2
Query: 35 LYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISL 214
L+ ++S A V+++ S L P LR+ F + ++ L P DS G T+S S
Sbjct: 53 LFHVIQSASAAVEQQPSSSSL--PMKLRKLPPSFFKQPTILDPSKLAPDDSSGLTISHSR 110
Query: 215 PDSARLASALEAFSIIPRMVASH 283
+S+ + ++ S P + H
Sbjct: 111 ANSSPASLSVPTSSAGPPNYSLH 133
>SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)
Length = 1931
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 35 LYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPP 181
L D+R++ A V D++ RD GL R + + V+++C P
Sbjct: 1349 LIVDIRAKFATVLGSVDNLGARDAQGLSRDILMLLRLAQDVQTYCASAP 1397
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,856,275
Number of Sequences: 59808
Number of extensions: 270570
Number of successful extensions: 838
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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