Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0483
         (424 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11090.1 68418.m01295 serine-rich protein-related contains so...    28   2.3  
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    28   3.0  
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    27   4.0  
At3g19580.1 68416.m02483 zinc finger (C2H2 type) protein 2 (AZF2...    27   4.0  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   4.0  
At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xy...    26   9.1  
At4g26190.1 68417.m03770 expressed protein                             26   9.1  

>At5g11090.1 68418.m01295 serine-rich protein-related contains some
           similarity to serine-rich proteins
          Length = 217

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 336 RNRSFGHLVHAPRPSGRWCEATIRGIMLNASKAEASLAES 217
           R +S G ++ +  PSGR+C    R +  ++S A AS   S
Sbjct: 7   RTKSNGPVLRSQSPSGRFCGGYSRAVPSSSSSAFASSTSS 46


>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 291 GRWCEATIRGIMLNASKAEASLAESGKDMLTVEPRESGGSKQCD 160
           G W +  +       +K + ++ + GKD LT+E  E  G+ + D
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329


>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 14  EPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 166
           +PR R  LY D  +  + + K+T S+D+   NG +   S+ E   R+ + H
Sbjct: 149 KPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196


>At3g19580.1 68416.m02483 zinc finger (C2H2 type) protein 2 (AZF2)
           identical to Cys2/His2-type zinc finger protein 2
           [Arabidopsis thaliana] gi|6009885|dbj|BAA85107
          Length = 273

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 256 HNPADGSFAPPAARPRCMNQ 315
           H+P+  S +PP +RP+  NQ
Sbjct: 44  HSPSSSSSSPPRSRPKSQNQ 63


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 242 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 102
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


>At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xylan
           endohydrolase isoenzyme X-I, Hordeum
           vulgare,PID:g1813595
          Length = 544

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 23/69 (33%), Positives = 27/69 (39%)
 Frame = -1

Query: 295 ERPVVRSYHPRDYAERL*GRSQPSRIRQGYAHCGAPRVGRL*TM*LY*SRFAFKTRDATS 116
           E P      P  Y E+L    Q  R+R G    G        T  +   R A  T  AT 
Sbjct: 351 EDPTDLKASPAKYLEKL-RELQSIRVR-GNIPLGIGLESHFSTPNIPYMRSALDTLGATG 408

Query: 115 KPIWIAEID 89
            PIW+ EID
Sbjct: 409 LPIWLTEID 417


>At4g26190.1 68417.m03770 expressed protein
          Length = 1067

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 139  FKTRDATSKPIWIAEIDAIGFFLNTCITAPK 47
            FKT++   KP+++ ++  +   + TCI+  K
Sbjct: 944  FKTQEKKDKPLFLKDLRRVWDHIGTCISCGK 974


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,430,851
Number of Sequences: 28952
Number of extensions: 187807
Number of successful extensions: 518
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)