Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0482
         (340 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   1.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   2.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   3.4  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   4.6  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   4.6  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    20   6.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   8.0  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 176 RIPWNSNAQAEKKTLPGPLG 117
           +IPW+ NA+A  K   G  G
Sbjct: 330 QIPWDKNAEALAKWANGQTG 349


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +2

Query: 254 NSGEGCTWRCRAGSXPYPQQVS 319
           N G+G + +C      YP  +S
Sbjct: 616 NEGDGVSVQCTVSKGDYPLNIS 637


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 130 PDLSAASSGHFGLPRRTLVFKDEG 59
           P +S++     G      VFKDEG
Sbjct: 2   PHVSSSGGDDLGSTDEVKVFKDEG 25



 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -2

Query: 255 FQGPQRVSGHRREC 214
           F GP R++   R C
Sbjct: 602 FHGPHRLAARSRRC 615


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 16  FLFRNPAAEPFQ*SFPRL*KRVFDGVTQSGLKTPPRG 126
           F+   P+   F  + P L   +  G + S   TPP G
Sbjct: 60  FINSQPSMAEFMTALPHLSGDMTHGASISPQNTPPAG 96


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 16  FLFRNPAAEPFQ*SFPRL*KRVFDGVTQSGLKTPPRG 126
           F+   P+   F  + P L   +  G + S   TPP G
Sbjct: 60  FINSQPSMAEFMTALPHLSGDMTHGASISPQNTPPAG 96



 Score = 20.2 bits (40), Expect = 6.0
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 188 IWFGTRRAPHSRR 226
           +WF  RR  H R+
Sbjct: 181 VWFQNRRMKHKRQ 193


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 188 IWFGTRRAPHSRR 226
           +WF  RR  H R+
Sbjct: 50  VWFQNRRMKHKRQ 62


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -2

Query: 255 FQGPQRVSGHRREC 214
           F GP R++   R C
Sbjct: 494 FHGPHRLAARSRRC 507


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,308
Number of Sequences: 336
Number of extensions: 1657
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6558670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)