Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0482
(340 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 26 1.4
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 1.8
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 1.8
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 2.4
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 3.2
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 3.2
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 3.2
SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz... 25 3.2
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 25 4.2
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 25 4.2
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 24 5.5
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 24 5.5
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces... 24 7.3
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 24 7.3
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo... 24 7.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 24 7.3
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 24 7.3
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces... 24 7.3
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 24 7.3
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 24 7.3
SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch... 24 7.3
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 23 9.6
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 23 9.6
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 26.2 bits (55), Expect = 1.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 165 PWNPIEGRYGSEREEHRIRGGVRILSADLEIQVRDVRGDVAP 290
P+ P+EG Y + ++ HRI R A LE ++R V+ P
Sbjct: 3 PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.8 bits (54), Expect = 1.8
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -3
Query: 278 STYIPHLNFKVRREYPDTAANAVLFAFRTISPFYRIPWNSNAQA 147
STY P L V D N F I+P+Y WN A A
Sbjct: 257 STYWPALAAPVYPSMKDVPNNPFT-PFSPINPYYAKSWNHTASA 299
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 1.8
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -1
Query: 217 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 80
MR + E Y+ + G H T Q LF D + H L RRT
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 2.4
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 264 SPEFQGPQRVSGHRRECGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 103
+P + P VSGH LR+ IS SM +ERS R ++ + +
Sbjct: 611 TPLAKKPLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 3.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 76 RVFDGVTQSGLKTPPRGPGRV 138
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 3.2
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +3
Query: 12 PVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPW 170
PV + G TV+ P+S+ + +P+ P A+ + CL + W
Sbjct: 132 PVSLEVRGRNTVTFYGPTSIFGTSFTSSPRPPPSASIEDTYPIIHCLQLFFKW 184
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 3.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 76 RVFDGVTQSGLKTPPRGPGRV 138
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 102
Score = 25.0 bits (52), Expect = 3.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 264 SPEFQGPQRVSGHRRECGALR 202
SPEF G RV+ HR G L+
Sbjct: 60 SPEFSGMSRVARHRLVYGLLK 80
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 24.6 bits (51), Expect = 4.2
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 12 PVPI-PEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERS 128
P+PI P+ ++ P+S TS R P P+D S
Sbjct: 338 PIPILPKMKDTSIPAAEPASSTTSARDQTPSTPKDVGSPS 377
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 24.6 bits (51), Expect = 4.2
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -1
Query: 181 SIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 80
++ GTR L+ K PD+ ++ G + L T
Sbjct: 8 NVNIQGTRVLKNKLGKIPDIDISTDGKYLLSAST 41
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 24.2 bits (50), Expect = 5.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 136 LFPDLSAASSGHFGLPRRT 80
LFP +S + G F +PRRT
Sbjct: 386 LFPSVSVENFGCFQVPRRT 404
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 24.2 bits (50), Expect = 5.5
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +3
Query: 3 KGNPVPIPEPGSGTVSI 53
K NPV I EPG G SI
Sbjct: 202 KNNPVLIGEPGVGKTSI 218
>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 208
Score = 23.8 bits (49), Expect = 7.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 117 RRLQATLGYPVEHSFLKTRERLLKR 43
RR+ +T+G PV+H E L+R
Sbjct: 87 RRVASTIGIPVDHRRRNRSEESLQR 111
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 23.8 bits (49), Expect = 7.3
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +1
Query: 160 EFHGIL*KGDMVRNAKST 213
E+HG+ +G +VRNA ++
Sbjct: 69 EYHGVQARGQLVRNADNS 86
>SPAC18G6.06 |||U3 snoRNP-associated protein
Utp11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 23.8 bits (49), Expect = 7.3
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -2
Query: 159 ERSGRKENSSRTSRRR---LQATLGYPVEHSFLKTRERLLKRFRCRVPE*EPD 10
+R +E + RR+ L+ Y KT+++ LKR R + E PD
Sbjct: 10 QRKNHRERAQPFERRKWGLLEKRKDYAQRAQDYKTKQKKLKRLREKALERNPD 62
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.8 bits (49), Expect = 7.3
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 12 PVPIPEPGSGTVS 50
P PIP P +GTVS
Sbjct: 253 PPPIPPPSNGTVS 265
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 23.8 bits (49), Expect = 7.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 148 QKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIETVPLPGS 26
Q +K FPD ++ SG + +F+D ++ P GS
Sbjct: 383 QIQKRFPDATSPFSGESMFREYSSIFEDYHQLLVNFPSEGS 423
>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 336
Score = 23.8 bits (49), Expect = 7.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 58 TIIETVPLPGSGIGTGFPF 2
T+ E VP+P S G FPF
Sbjct: 264 TVREPVPVPKSNSGFRFPF 282
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 23.8 bits (49), Expect = 7.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 18 PIPEPGSGTVSIIVPSSLKTSVRRGNPKWPE 110
P P +V++I+ + K S NPKWP+
Sbjct: 23 PNAPPRRASVAVII--AFKESQDFSNPKWPQ 51
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 23.8 bits (49), Expect = 7.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 126 SGKSFLFCLSVRVPWNPIEGRYGSERE 206
+G LFCLS+ WN +Y R+
Sbjct: 478 AGSLQLFCLSIIKRWNQTGQKYSDLRD 504
>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 402
Score = 23.8 bits (49), Expect = 7.3
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -1
Query: 79 LVFKDEGTIIETVPLPGSGIGTG 11
L D + V PGSG+GTG
Sbjct: 197 LKIHDTSMVNANVSTPGSGVGTG 219
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 23.4 bits (48), Expect = 9.6
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 21 IPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVR 161
+P P S S S L +S+ R +PK P D+ L SV+
Sbjct: 96 LPPPSSDPFS----SPLSSSLHRSSPKRPHDSLGEESPGKLLRTSVK 138
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 23.4 bits (48), Expect = 9.6
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = -3
Query: 293 NRRDIST-YIP-HLNFKVRREYPDT 225
+RR IS Y+ HLNF VRR DT
Sbjct: 444 DRRAISNPYVSNHLNFNVRRVKSDT 468
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,468,598
Number of Sequences: 5004
Number of extensions: 28384
Number of successful extensions: 106
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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