Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0478
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    33   0.051
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   1.9  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    27   2.5  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    27   2.5  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   4.4  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   5.8  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   7.7  

>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 32.7 bits (71), Expect = 0.051
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = -1

Query: 622 DDSYRIRRSGRAERGVRAHSPAWSERPTPN*DTYSVSYRKRHASRREKGGQV---SGKRQ 452
           +D+Y      R ERG       W+++P P+          +   RRE+GG+V   SG+ +
Sbjct: 61  EDAYYEVHGRRLERGGGVLRVEWAKQPPPS------GPGSKRGGRRERGGRVHGDSGRLR 114

Query: 451 GRNRRAHEGASR 416
            R+   HE  SR
Sbjct: 115 SRSPSPHEARSR 126


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 422 SSLVRSPVPTLPLTGYLSAFLPSGSVALSIAHAVGISVRCRSFAPSWAVC 571
           SS   S VP+      L+A   S   +L+    VGI + C +FA   A+C
Sbjct: 261 SSSTSSEVPSSTAALALNASKASNHTSLNAGAIVGIVIGCVAFAVVMALC 310


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
 Frame = +2

Query: 464 GYLSAFLPSGSVALSIAHAVGISVRCRSFAPSWAVCT------NPPFSPTAAPYPVTIVL 625
           GY+   +P  S AL    + GI V  R  A  + VCT      + P  P+  P   T+ L
Sbjct: 364 GYVPTVIPGISSALMAPISAGIPVTHRGVADQFLVCTGTGQKGSMPKIPSFVPTQTTVFL 423


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +1

Query: 460 YRIPVRLSPFGKRGAFYSSRCRYLSSV*VVRSKLGCVHEPPVQPDRCA-LSGNYRLESNP 636
           YRIP R  PF   GA + + C +   +   +    CV        +CA L  +Y   SN 
Sbjct: 477 YRIPHRFEPFNSLGAQWCAHCGFFLPL-RRKDCFKCVECGITCHGQCAHLIPDYCGMSND 535

Query: 637 VRHDL 651
           ++H L
Sbjct: 536 LKHQL 540


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
 Frame = +2

Query: 380 NPTGL*RYQAFPPGSSLVRSPVPTLPLTGYLSAFLPSGSVALSIAHAVGISVRCRSFAPS 559
           N   + R  A  P S    SP P++PL G  +    + S A   AH +   +   +  P 
Sbjct: 229 NAAAIVRKSAVTPSSDPYNSPPPSIPLLGSQTNLQLAPSFAAPQAHPLPSHLSQSNVPPQ 288

Query: 560 WAVCTNP-PFSPTAAPYP 610
            +  + P P  P +   P
Sbjct: 289 LSHSSVPSPAPPRSVSQP 306


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +2

Query: 341 EHHKNRRSSQRWRNPTGL*RYQAF----PPGSSLVRSPVPTLPLTGY 469
           ++HKNR+S+     P GL  Y+A     PPG     +      L GY
Sbjct: 389 DYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTTAAHLVAKLEGY 435


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +2

Query: 449 TLPLTGYLSAFLPSGSVALSIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPVTIV 622
           TL  + Y S +LP+ ++ LSI     IS          +   +   SPTA     TIV
Sbjct: 161 TLIYSTYTSTYLPNSTIDLSILPHSTISTLSTVSINDTSASLSKTTSPTAGTITETIV 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,140
Number of Sequences: 5004
Number of extensions: 57922
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)