Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0478
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 31 1.1
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474... 29 2.6
07_03_1028 - 23378140-23378802 29 2.6
01_06_1476 + 37640278-37642551 29 2.6
01_05_0175 - 18936752-18937621,18938855-18941641 29 3.4
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 29 4.5
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 6.0
06_03_0218 + 18219956-18220555 28 6.0
06_02_0155 + 12380452-12381012 28 6.0
06_01_0336 + 2427017-2427121,2427585-2427662,2427889-2427960,242... 28 6.0
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 28 6.0
03_04_0061 - 16949038-16950006 28 6.0
03_02_0178 + 6195402-6199158,6199438-6200003 28 6.0
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 28 6.0
05_04_0142 - 18372751-18373338 28 7.9
03_02_0472 - 8737955-8738580,8738704-8738767,8739090-8739239,873... 28 7.9
01_02_0036 + 10468636-10468938,10469014-10469109,10469247-104694... 28 7.9
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +3
Query: 306 CWRXSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 464
CWR + T D Q + +KD P + PSC L+F P P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335
>09_04_0424 +
17444261-17444665,17445974-17446367,17447367-17447425,
17447507-17447637,17447737-17447833,17447936-17448100
Length = 416
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 479 FLPSGSVALSIAHAVGISVR--CRSFAPSWAVCTNPPFSPTAAPYPVTIVL 625
F P G+ A+ + H + + F P AV PP P AAP PV + +
Sbjct: 42 FAPPGAAAMVMQHQMAPAPPQFAPHFVPFHAVGPPPPPQPRAAPPPVAVAM 92
>07_03_1028 - 23378140-23378802
Length = 220
Score = 29.5 bits (63), Expect = 2.6
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Frame = -1
Query: 622 DDSYRIRRSGRAERGVRAHSPAW-----SERPTPN*DTYSVSYRKRHASRREKGGQVSGK 458
DD Y R S + ++ A A + RPT + S S K + R GG + +
Sbjct: 72 DDDYAYRASKKKKQQAAAEQAARMPNNRTTRPTTRRASSSRSRTKEESHAR--GGGAAPR 129
Query: 457 RQGRNRRAHEGASRG-KRLVSL*SCRVSPPLT 365
R+ ++R+ G R +R ++ RV PP T
Sbjct: 130 RENKDRKDGAGGRRSQRRAPTISGPRVPPPAT 161
>01_06_1476 + 37640278-37642551
Length = 757
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +2
Query: 377 RNPTGL*RYQAFPPGSSLVRSPVPTLPL-----TGYLSAFLPSGSVALSIAHAVGISVRC 541
R+ G+ + PG S++ + P PL T S F +++ HA G++
Sbjct: 496 RSYEGVLKPDIMAPGDSILAAWAPVAPLAQVGSTALGSDFAVESGTSMACPHAAGVAALL 555
Query: 542 RSFAPSWA 565
R+ P W+
Sbjct: 556 RAAHPDWS 563
>01_05_0175 - 18936752-18937621,18938855-18941641
Length = 1218
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 443 VPTLPLTGYLSAFLPSGSVALSIAHAVGISVRCRSFAPSWAVCTN-PPFSPTAAPYPVTI 619
V T G A + +G +A + H VG+ RCR SW + P F+ AP +
Sbjct: 28 VTTQVSLGGFDAGVAAGDLADFLEHEVGLVWRCR-VKTSWTPPDSYPDFALPTAPASASA 86
Query: 620 VLSPTR*DTTYRH 658
+P R D H
Sbjct: 87 AAAPPRYDRVPPH 99
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 416 PGSSLVRSPVPTLPLTGYLSAFLPSGSVALSIAHAVGISVRCRSFAPSWA 565
P SL+ PVP P +LS LPS + + +GI ++ + P WA
Sbjct: 602 PLQSLLPLPVPRSPSESWLSRTLPSVTSKPPVPSFLGIQLQSKKQTP-WA 650
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 88 NESAN---ARGEAVCVLGALPLPRSLTRCAR 171
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>06_03_0218 + 18219956-18220555
Length = 199
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -1
Query: 493 SRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 398
+RRE+ + +G KR+GR R G RGKR S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139
>06_02_0155 + 12380452-12381012
Length = 186
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +2
Query: 404 QAFPPGSSLVRSPVPTLPLTGYLSAFLPSGSVALSIAHAVGISVRCRSFAPSWAVCTNPP 583
Q PP P +P + A P+G A AH G +V R+ S + PP
Sbjct: 76 QISPPKEGAAGKPPMVVPAANHPQA--PTGEEAKK-AHGGGGAVGRRNGISSTVLTAPPP 132
Query: 584 FSPTAAP 604
P AAP
Sbjct: 133 VGPMAAP 139
>06_01_0336 +
2427017-2427121,2427585-2427662,2427889-2427960,
2428105-2428671,2428822-2428935,2431308-2432246
Length = 624
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 52 LSSRETCRASCINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL 201
+S R C A +N+ R + P PR+ RC + GC R Q+
Sbjct: 264 VSVRARCDAPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAAGCPVRKQV 313
>04_04_1263 -
32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 28.3 bits (60), Expect = 6.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 109 PARWPIH*CSWHDRFPDWKAG 47
P +W +H WH P W++G
Sbjct: 900 PDQWGLHIVIWHGASPSWRSG 920
>03_04_0061 - 16949038-16950006
Length = 322
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 388 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 504
RT+K PG+ ++PRA+ + P Y VR + +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/59 (35%), Positives = 24/59 (40%)
Frame = +2
Query: 356 RRSSQRWRNPTGL*RYQAFPPGSSLVRSPVPTLPLTGYLSAFLPSGSVALSIAHAVGIS 532
RR S WR+ GL Y+A P S P P L L S V S + GIS
Sbjct: 113 RRQSGGWRDSEGLDGYRAAPRRSG-ASPPTPPLRLPSESSRRFDGARVEKSRKQSFGIS 170
>02_05_0481 +
29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 464 GYLSAFLPSGSVALSIAHAVGISVRCRSFA-PSW 562
G L +FL SV L ++ V + V C SFA P W
Sbjct: 658 GLLLSFLSKSSVILGLSLTVPLMVACLSFAIPIW 691
>05_04_0142 - 18372751-18373338
Length = 195
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 502 RHASRREKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 386
R E+GG G++QGR R+A A R +RL + +C
Sbjct: 59 RRVEEEEQGGGGGGRKQGRRRKAVARAIR-ERLPAAVAC 96
>03_02_0472 -
8737955-8738580,8738704-8738767,8739090-8739239,
8739311-8739422,8739686-8739708
Length = 324
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 520 SVSYRKRHASRREKGGQVSGKRQGRNRRAHEGAS 419
S S RKR++ R+ + SGKR R +H +S
Sbjct: 280 SYSPRKRYSERKPSRSRSSGKRHSRESYSHSRSS 313
>01_02_0036 +
10468636-10468938,10469014-10469109,10469247-10469453,
10470762-10471097,10471469-10471582,10471634-10471639
Length = 353
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +1
Query: 31 LRCAHCPLSSRETCRASCINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL 201
L C +S R A I++ R + P PR+ RC + GC R QL
Sbjct: 297 LPCRKPRVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAIGCPVRKQL 353
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,162,049
Number of Sequences: 37544
Number of extensions: 513263
Number of successful extensions: 1943
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1942
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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