Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0478
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16559-6|AAA27931.1|  397|Caenorhabditis elegans Hypothetical pr...    31   0.77 
L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cycl...    29   4.1  
AC006627-7|AAK85463.1|  218|Caenorhabditis elegans Hypothetical ...    28   5.4  
U53340-5|AAR25650.1|  425|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U53340-4|AAA96209.2|  445|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AL032637-21|CAA21618.2|  612|Caenorhabditis elegans Hypothetical...    27   9.4  

>L16559-6|AAA27931.1|  397|Caenorhabditis elegans Hypothetical
           protein C06E1.8 protein.
          Length = 397

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 428 LVRSPVPTLPLTGYLSAFLPSGSVALSIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAP 604
           L+R+P+  LP    L + +PS  +A     A+   +R +   PSW      P  PT AP
Sbjct: 161 LIRTPLLNLPTPQSLESSVPSLPIASIPIPALQSPIRSQPQTPSWLANLPKPI-PTTAP 218


>L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical
           protein C30A5.3 protein.
          Length = 223

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 393 YKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFL 509
           Y+  R+F +E    ALL +   +P+TC   +  E W FL
Sbjct: 71  YEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFL 109


>AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cyclase
           protein 17 protein.
          Length = 1146

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +3

Query: 246 AGKTCEQKASKRPGTVKRPRCWRXSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEA 425
           AGKT +    K+   +  P C R ++ S+ L +   I     G  + +   D +RFP   
Sbjct: 76  AGKTVDLLEVKKVDVIFGPTCSRPALISSALATYYNIPIFEWGLTSTRQLTDVKRFPTTL 135

Query: 426 P 428
           P
Sbjct: 136 P 136


>AC006627-7|AAK85463.1|  218|Caenorhabditis elegans Hypothetical
           protein E01A2.6 protein.
          Length = 218

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +3

Query: 231 ESGDNAGKTCEQKASKRPGTVKRPRCWRXSIGSAPLTSIT 350
           + GD  G  C    SK       P+    S G AP TS+T
Sbjct: 106 DDGDQRGDGCSSNYSKAYRAPSSPKSGSDSEGEAPSTSVT 145


>U53340-5|AAR25650.1|  425|Caenorhabditis elegans Hypothetical
           protein F02E8.2b protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
 Frame = -2

Query: 291 RFLAFCWPFAHMSFL------RYPLILWITVLPP 208
           RF A C+PF+H +        R+ L++W   L P
Sbjct: 174 RFTAICYPFSHRTIFDEKRVKRFILLIWFVALLP 207


>U53340-4|AAA96209.2|  445|Caenorhabditis elegans Hypothetical
           protein F02E8.2a protein.
          Length = 445

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
 Frame = -2

Query: 291 RFLAFCWPFAHMSFL------RYPLILWITVLPP 208
           RF A C+PF+H +        R+ L++W   L P
Sbjct: 174 RFTAICYPFSHRTIFDEKRVKRFILLIWFVALLP 207


>AL032637-21|CAA21618.2|  612|Caenorhabditis elegans Hypothetical
           protein Y43F8C.3 protein.
          Length = 612

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +1

Query: 397 KIPGVSPWKLPR-ALSCSDPAAYRIPVRLSPFGKRGAFYSSRCRYLSSV*VVRSKLGCVH 573
           K+ G + W++ + A+       + I ++L   G+  ++YS     L+   V R ++ C H
Sbjct: 12  KLDGETEWQVKKEAVMKLGKTEWAIRLKLCKQGENHSYYSLHVAALTPNQVSRLQIKCTH 71

Query: 574 --EPPV 585
             EPPV
Sbjct: 72  QVEPPV 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,025,046
Number of Sequences: 27780
Number of extensions: 357275
Number of successful extensions: 1033
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)