Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0478
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   1.6  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.6  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   3.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.3  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 560 WAVCTNPPFSPTAAP 604
           W V  +PP+SP  AP
Sbjct: 264 WDVLPHPPYSPDLAP 278


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -1

Query: 625 QDDSYRIRRSGRAERGVRAHSPAWSERPTPN*DTYSVSYRKRHASRREKGGQVSGKRQGR 446
           Q   Y  RR   AE G        S  P P+ D  +V+  KR  +++ +G + +     +
Sbjct: 8   QAAEYIERREREAEHGYA------STMPMPD-DMRTVT--KRPKTKKSQGSRTTHNELEK 58

Query: 445 NRRAH 431
           NRRAH
Sbjct: 59  NRRAH 63


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 399 DTRRFPLEAPSCALLFRPCR 458
           + R FP++  SC L+   C+
Sbjct: 165 ELRNFPMDRQSCPLILGSCK 184


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +3

Query: 255 TCEQKASKRPGTVKRPR--CWRXSIGSAPLTSITKIDAQVRGGETRQDYKDTR 407
           T      +R   V +PR   WR +I S           ++  G + +D+K TR
Sbjct: 382 TAPNAEERRVQGVTKPRYMVWRETISSTATLGFRVEGIKLAHGGSSKDFKTTR 434


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +3

Query: 255 TCEQKASKRPGTVKRPR--CWRXSIGSAPLTSITKIDAQVRGGETRQDYKDTR 407
           T      +R   V +PR   WR +I S           ++  G + +D+K TR
Sbjct: 297 TAPNAEERRVQGVTKPRYMVWRETISSTATLGFRVEGIKLAHGGSSKDFKTTR 349


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +3

Query: 255 TCEQKASKRPGTVKRPR--CWRXSIGSAPLTSITKIDAQVRGGETRQDYKDTR 407
           T      +R   V +PR   WR +I S           ++  G + +D+K TR
Sbjct: 616 TAPNAEERRVQGVTKPRYMVWRETISSTATLGFRVEGIKLAHGGSSKDFKTTR 668


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 304 RGLFTVPGLLLAFCSHVFPALSPDSVDNRITAF 206
           R + T  G+  A C+H+  + +  ++ + IT F
Sbjct: 141 RYVTTTSGMFEALCNHIKYSTNKGNIRSAITIF 173


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 54  FQSGNLSCQLH**IGQRAGRG 116
           F  GNL CQ+   IG   G G
Sbjct: 113 FALGNLGCQIFAVIGSLTGIG 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,969
Number of Sequences: 438
Number of extensions: 4655
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)