Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0475
         (523 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   3.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   5.0  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   8.7  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 432 NYMC*DLFFLFISRNSLSYIYYKSPI 509
           NY+   LF L +++N+  + ++K+PI
Sbjct: 41  NYINSYLFSLSLAQNNQLFTHHKAPI 66


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 406 LIFISSNLLIICVEIYFFYLY 468
           ++F    LL++C+  YF+Y++
Sbjct: 246 ILFTVHLLLLVCI-YYFYYMH 265


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 397 RIALIFISSNLLIICVEIYFFYLY 468
           RI L+     ++II +EIY  +LY
Sbjct: 119 RIILLKSVLEIVIIDIEIYSQFLY 142


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,215
Number of Sequences: 336
Number of extensions: 1581
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)