Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0475
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70205-6|CAH60749.1|  260|Caenorhabditis elegans Hypothetical pr...    31   0.50 
Z70205-5|CAH60748.1|  421|Caenorhabditis elegans Hypothetical pr...    31   0.50 
AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine r...    27   6.2  

>Z70205-6|CAH60749.1|  260|Caenorhabditis elegans Hypothetical
           protein C11H1.9b protein.
          Length = 260

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 352 LGGLRSVAQTISYEVR-IALIFISSNLLIICVEIYFFYLYPEIV*VIFIIN 501
           L  LR +     YE+    ++F++S  L    +++ F  YPE+V  + ++N
Sbjct: 159 LSSLRHIVNMDGYEINPFTMVFVTSGTLAYYSQLFHFENYPELVTPVDMVN 209


>Z70205-5|CAH60748.1|  421|Caenorhabditis elegans Hypothetical
           protein C11H1.9a protein.
          Length = 421

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 352 LGGLRSVAQTISYEVR-IALIFISSNLLIICVEIYFFYLYPEIV*VIFIIN 501
           L  LR +     YE+    ++F++S  L    +++ F  YPE+V  + ++N
Sbjct: 159 LSSLRHIVNMDGYEINPFTMVFVTSGTLAYYSQLFHFENYPELVTPVDMVN 209


>AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine
           receptor, class z protein28 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/39 (23%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
 Frame = +1

Query: 412 FISSNLLIICVEIYFFYLYPEIV*VIFIINPL--FYVFF 522
           F++ + LI+CV +++ Y++ ++  +I ++  +  F++F+
Sbjct: 87  FLNLSTLILCVCLFYLYIFDQVFHLIILLLAIQRFFLFY 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,260,968
Number of Sequences: 27780
Number of extensions: 128079
Number of successful extensions: 323
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)