Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0475
         (523 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07785.1 68415.m00946 NADH-ubiquinone oxidoreductase, putativ...    54   6e-08
At4g36850.1 68417.m05225 PQ-loop repeat family protein / transme...    31   0.36 
At2g41050.1 68415.m05069 PQ-loop repeat family protein / transme...    29   1.4  
At4g20100.1 68417.m02941 PQ-loop repeat family protein / transme...    28   4.4  

>At2g07785.1 68415.m00946 NADH-ubiquinone oxidoreductase, putative
           similar to NADH-ubiquinone oxidoreductase chain 1 (EC
           1.6.5.3) (Swiss-Prot:Q01300) [Petunia hybrida]
          Length = 99

 Score = 54.0 bits (124), Expect = 6e-08
 Identities = 24/63 (38%), Positives = 36/63 (57%)
 Frame = +2

Query: 47  LGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXXXXXXX 226
           + ++Q RKGP+ VG  GLLQP +D  KL  KE   P+ +N+F +  +PV  F+       
Sbjct: 1   MAFVQRRKGPDVVGSFGLLQPLADGSKLILKEPISPSSANFFLFRMAPVATFMLSLVARA 60

Query: 227 XIP 235
            +P
Sbjct: 61  VVP 63


>At4g36850.1 68417.m05225 PQ-loop repeat family protein /
           transmembrane family protein similar to SP|Q10482 Seven
           transmembrane protein 1 {Schizosaccharomyces pombe};
           contains Pfam profile PF04193: PQ loop repeat
          Length = 374

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +1

Query: 289 TSLGVYIVIIAGWASNSNYALLGGLRSVAQTISYEVRIALIFISSNLLIICVEIYFFYLY 468
           +S GV +  +  W +   + L+G L   A T+  +   AL++  S ++++   IY+ Y+Y
Sbjct: 61  SSNGVSLSFLLAWVAGDIFNLVGCLLEPA-TLPTQFYTALLYTVSTVVLVIQTIYYDYIY 119


>At2g41050.1 68415.m05069 PQ-loop repeat family protein /
           transmembrane family protein similar to SP|Q10482 Seven
           transmembrane protein 1 {Schizosaccharomyces pombe};
           contains Pfam profile PF04193: PQ loop repeat
          Length = 376

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +1

Query: 298 GVYIVIIAGWASNSNYALLGGLRSVAQTISYEVRIALIFISSNLLIICVEIYFFYLYPEI 477
           G+ I  +  W     + LLG L   A T+  +  +AL++  +  ++    IY+ ++YP +
Sbjct: 42  GLSITFLTTWMIGDIFNLLGCLMEPA-TLPTQFYMALLYTVTTSVLYVQSIYYGHIYPRL 100


>At4g20100.1 68417.m02941 PQ-loop repeat family protein /
           transmembrane family protein similar to SP|Q10482 Seven
           transmembrane protein 1 {Schizosaccharomyces pombe};
           contains Pfam profile PF04193: PQ loop repeat
          Length = 288

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/61 (21%), Positives = 31/61 (50%)
 Frame = +1

Query: 298 GVYIVIIAGWASNSNYALLGGLRSVAQTISYEVRIALIFISSNLLIICVEIYFFYLYPEI 477
           GV I  +  W     + ++G L   A ++  +   A+++  + L++    IY+ ++YP +
Sbjct: 37  GVSITFLTTWMLGDIFNVVGCLMEPA-SLPVQFYTAVLYTLATLVLYVQSIYYGHIYPRL 95

Query: 478 V 480
           +
Sbjct: 96  M 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,507,991
Number of Sequences: 28952
Number of extensions: 107932
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)