Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0474
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69883-6|CAA93744.2|  461|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical ...    30   2.0  
U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U50068-4|AAB37733.1|  287|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   6.0  

>Z69883-6|CAA93744.2|  461|Caenorhabditis elegans Hypothetical
           protein C27C12.2 protein.
          Length = 461

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/37 (48%), Positives = 22/37 (59%)
 Frame = -3

Query: 321 HLRYSLTDVPPQSNSPPGSVLERITREF*TATSVSAT 211
           HL  SL +  PQSNS P +V+ R+ R   T TS S T
Sbjct: 248 HLGSSLQNEHPQSNSRPSTVIPRVQR---TNTSASLT 281


>AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical
           protein Y119C1B.3 protein.
          Length = 450

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 290 PSQTPRLAVSSNGSRGSFKRRRAFPPRHHSARLER 186
           P++TP+   SS     S +R + FP  HH  RL+R
Sbjct: 409 PTRTPKQRRSSRIRSISDEREQLFPRHHHGRRLDR 443


>U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical
           protein C23H3.9d protein.
          Length = 432

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -3

Query: 303 TDVPPQSNSPPGSVLERITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPP-NRVS 127
           T   P+S+S      +R+   + T T  +A S      T  +AP  I DR   P  NR+S
Sbjct: 69  TTSEPRSHSRDARPTQRLPLTWSTVTPTAAPSQPIPTATSRKAPWYIKDRTAWPTYNRIS 128

Query: 126 NE 121
            E
Sbjct: 129 AE 130


>U50068-4|AAB37733.1|  287|Caenorhabditis elegans Hypothetical
           protein C01G5.5 protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 470 KSYHRDNWLVAAKVHSDVAF*SFDVGS--SYHCEQIRQALDCSP 595
           K Y +D W+   K+H++    S  V +   +H E++R  +   P
Sbjct: 125 KMYRKDTWIALEKLHAEGKIRSIGVSNYEPHHIEEMRSYITIEP 168


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -3

Query: 195 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 61
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,328,608
Number of Sequences: 27780
Number of extensions: 369677
Number of successful extensions: 977
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)