Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0473
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0272 - 23738514-23738817,23739382-23740748                       29   2.7  
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764           29   4.7  
05_02_0028 - 5764980-5766374                                           29   4.7  
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    28   6.2  
02_05_0125 + 26046448-26046654,26046754-26047149,26047557-26047763     28   8.1  

>05_05_0272 - 23738514-23738817,23739382-23740748
          Length = 556

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 324 GHLRYS-LTDVPPQSNSPPGSVLERITREF*TATSVSATSPLCTLGTKH 181
           G  RY+ +TDVPP  N P   V   IT EF T   +   +P  ++ + H
Sbjct: 398 GVFRYNQMTDVPPAVNGPLHVVPNVITAEFRTFIEIIFENPEKSMDSVH 446


>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
          Length = 640

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 208 TTLHAWNETPCARRYY 161
           TT  AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575


>05_02_0028 - 5764980-5766374
          Length = 464

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -3

Query: 269 AVSSNGSRGSFKRRRAFPPRHHSA---RLERNTV 177
           AVS  G  G + R  + PP HHS    RL  NT+
Sbjct: 15  AVSGGGLSGLYSRASSSPPLHHSGSRRRLRTNTL 48


>03_05_1065 +
           30061588-30061883,30061995-30062056,30062196-30062276,
           30062391-30062464,30062547-30062629,30063044-30063147,
           30063526-30063665,30063736-30063783,30063939-30063991,
           30064178-30064262,30064346-30064412,30064496-30064606,
           30065262-30065283,30066244-30071110,30071186-30071374,
           30071463-30071577,30072329-30073388,30074247-30074694,
           30074966-30075019,30075105-30076898,30076989-30077949,
           30078271-30078384,30078459-30078613,30078934-30079026,
           30079341-30079613,30093423-30093975,30094465-30094540,
           30094619-30094718
          Length = 4025

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = -2

Query: 378 SFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLERITREF*TA-TSVSATSPL 202
           +F P+ P     LA  + GH R+ + D   +  S  G +  +  R +     +VSA + L
Sbjct: 371 AFHPYLP-----LATTSSGHRRFGMEDEIEEELSLAG-IFNKGDRSYAVRRAAVSAYAAL 424

Query: 201 CTLGTKHRAPADIIDR 154
           C +   H AP  + DR
Sbjct: 425 CAVLCAHEAPGGLPDR 440


>02_05_0125 + 26046448-26046654,26046754-26047149,26047557-26047763
          Length = 269

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 298 CTAPVKLPAWQCPRTDHAGVLNGDERFRHVTTLHAWN 188
           C+A   +PA   P T H G         ++TTL  W+
Sbjct: 134 CSADDAVPAPAAPATSHGGSSGSSSISEYLTTLPGWH 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,635,639
Number of Sequences: 37544
Number of extensions: 433395
Number of successful extensions: 1240
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)