Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0473
(697 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC114377-1|AAI14378.1| 44|Homo sapiens Unknown (protein for MG... 41 0.005
AL356489-1|CAC88180.1| 130|Homo sapiens T cell receptor beta va... 30 6.9
U41221-1|AAA82080.1| 887|Homo sapiens hMSH2 protein. 30 9.1
U04045-1|AAA61870.1| 934|Homo sapiens hMSH2 protein. 30 9.1
U03911-1|AAA18643.1| 934|Homo sapiens hMSH2 protein. 30 9.1
L47583-1|AAB59564.1| 934|Homo sapiens DNA mismatch repair prote... 30 9.1
L47582-1|AAB59565.1| 934|Homo sapiens DNA mismatch repair prote... 30 9.1
L47581-1|AAA76858.1| 934|Homo sapiens DNA mismatch repair prote... 30 9.1
L47580-1|AAB59572.1| 810|Homo sapiens MSH2 protein. 30 9.1
L47579-1|AAB59571.1| 534|Homo sapiens MSH2 protein. 30 9.1
BC021566-1|AAH21566.1| 934|Homo sapiens mutS homolog 2, colon c... 30 9.1
AY601851-1|AAS99351.1| 934|Homo sapiens mutS homolog 2, colon c... 30 9.1
AK223284-1|BAD97004.1| 878|Homo sapiens mutS homolog 2 variant ... 30 9.1
AK222860-1|BAD96580.1| 878|Homo sapiens mutS homolog 2 variant ... 30 9.1
AC079775-2|AAY15096.1| 586|Homo sapiens unknown protein. 30 9.1
>BC114377-1|AAI14378.1| 44|Homo sapiens Unknown (protein for
MGC:134704) protein.
Length = 44
Score = 40.7 bits (91), Expect = 0.005
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = -3
Query: 506 WLPQASYPCGNFSGTSC*K 450
W PQASYPCGNFS TSC K
Sbjct: 19 WPPQASYPCGNFSDTSCLK 37
Score = 35.5 bits (78), Expect = 0.18
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = -1
Query: 559 MIGRADIEGSKSNVAMN 509
MIGRADIEGSKS+VAMN
Sbjct: 1 MIGRADIEGSKSDVAMN 17
>AL356489-1|CAC88180.1| 130|Homo sapiens T cell receptor beta
variable 25/OR9-2 protein.
Length = 130
Score = 30.3 bits (65), Expect = 6.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 636 SHDGLNPAHVPF*WVNNPTLGEFCSQ 559
S +G+ P H PF WVN+ G+ CS+
Sbjct: 60 SRNGITP-HPPFLWVNSTEKGDLCSE 84
>U41221-1|AAA82080.1| 887|Homo sapiens hMSH2 protein.
Length = 887
Score = 29.9 bits (64), Expect = 9.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 510 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 626
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>U04045-1|AAA61870.1| 934|Homo sapiens hMSH2 protein.
Length = 934
Score = 29.9 bits (64), Expect = 9.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 510 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 626
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>U03911-1|AAA18643.1| 934|Homo sapiens hMSH2 protein.
Length = 934
Score = 29.9 bits (64), Expect = 9.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 510 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 626
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>L47583-1|AAB59564.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 29.9 bits (64), Expect = 9.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 510 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 626
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>L47582-1|AAB59565.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 29.9 bits (64), Expect = 9.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 510 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 626
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>L47581-1|AAA76858.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 29.9 bits (64), Expect = 9.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 510 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 626
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>L47580-1|AAB59572.1| 810|Homo sapiens MSH2 protein.
Length = 810
Score = 29.9 bits (64), Expect = 9.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 510 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 626
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>L47579-1|AAB59571.1| 534|Homo sapiens MSH2 protein.
Length = 534
Score = 29.9 bits (64), Expect = 9.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 510 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 626
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>BC021566-1|AAH21566.1| 934|Homo sapiens mutS homolog 2, colon
cancer, nonpolyposis type 1 (E. coli) protein.
Length = 934
Score = 29.9 bits (64), Expect = 9.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 510 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 626
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>AY601851-1|AAS99351.1| 934|Homo sapiens mutS homolog 2, colon
cancer, nonpolyposis type 1 (E. coli) protein.
Length = 934
Score = 29.9 bits (64), Expect = 9.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 510 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 626
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>AK223284-1|BAD97004.1| 878|Homo sapiens mutS homolog 2 variant
protein.
Length = 878
Score = 29.9 bits (64), Expect = 9.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 510 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 626
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>AK222860-1|BAD96580.1| 878|Homo sapiens mutS homolog 2 variant
protein.
Length = 878
Score = 29.9 bits (64), Expect = 9.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 510 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 626
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>AC079775-2|AAY15096.1| 586|Homo sapiens unknown protein.
Length = 586
Score = 29.9 bits (64), Expect = 9.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 510 FIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLD 626
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,782,320
Number of Sequences: 237096
Number of extensions: 2435776
Number of successful extensions: 8510
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8510
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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