Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0473
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   0.91 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.8  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   6.4  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   6.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   8.5  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   8.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.5  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 319 PALFFDRCTAPVKLPAWQCPRTDHAGVL 236
           PA+ + R     ++P  +CP T+H G L
Sbjct: 180 PAIVWWRAVRTEEVPEDKCPFTEHLGYL 207


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 91  SSLKNHYFHCFITYSVGRK 147
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 70  VGDRFARSSLKNHYFHCFI 126
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 70  VGDRFARSSLKNHYFHCFI 126
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 651 GKTNLSHDGLNPAHVPF*WVNNPTLG 574
           GK N      +PA  PF W ++ + G
Sbjct: 404 GKENYQTMSRDPARTPFQWDDSVSAG 429


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 147 LPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQCQTRVKLNRVFFP 1
           +PP  V     K +V   R+ E     C  ++  +QC  +    + FFP
Sbjct: 97  MPPEEVV--IGKEIVAVCRNEEYTGDDCQKTYQYVQCHYKQNPEKFFFP 143


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 651 GKTNLSHDGLNPAHVPF*WVNNPTLG 574
           GK N      +PA  PF W ++ + G
Sbjct: 404 GKENYQTMSRDPARTPFQWDDSVSAG 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,172
Number of Sequences: 438
Number of extensions: 4264
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)