Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0473
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g36370.1 68414.m04518 glycine hydroxymethyltransferase, putat...    32   0.42 
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-...    31   0.73 
At5g18000.1 68418.m02111 transcriptional factor B3 family protei...    29   2.9  
At4g37190.1 68417.m05265 expressed protein                             29   2.9  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   2.9  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   6.8  
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ...    28   6.8  
At5g05360.2 68418.m00577 expressed protein similar to unknown pr...    27   9.0  
At5g05360.1 68418.m00578 expressed protein similar to unknown pr...    27   9.0  
At3g47910.1 68416.m05224 expressed protein low similarity to non...    27   9.0  
At2g03000.1 68415.m00252 zinc finger (C3HC4-type RING finger) fa...    27   9.0  

>At1g36370.1 68414.m04518 glycine hydroxymethyltransferase, putative
           / serine hydroxymethyltransferase, putative /
           serine/threonine aldolase, putative similar to serine
           hydroxymethyltransferase [Chlamydomonas reinhardtii]
           GI:17066746; contains Pfam profile PF00464: serine
           hydroxymethyltransferase
          Length = 598

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -1

Query: 544 DIEGSKSNVAMNLGC-HKPVTPVVTFLAPLAKNSLY*RIDRPCFRS 410
           D+  S++N  +  GC H  +TP  T  AP+A +S+  ++D+  FRS
Sbjct: 2   DLSRSQTNFQLGFGCSHASMTPTPTPRAPIADDSINLQVDQ-SFRS 46


>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
           GTP-binding protein GUF1 - Saccharomyces cerevisiae,
           PIR:S50374
          Length = 661

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 195 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 49
           LG +H  PA +I+R P PP  +S   +++++F     E    +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277


>At5g18000.1 68418.m02111 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 307

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 563 RNDRKSRHRRIKKQRRYEPWLPQASYPC 480
           R +RKS ++ +KK+   E W  ++S+PC
Sbjct: 135 REERKSIYKDVKKEEEIESW-SESSHPC 161


>At4g37190.1 68417.m05265 expressed protein
          Length = 562

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 568 LFAMIGRADIEGSKSNVAMNLGCHKPVTPVVTFLAPLAKNSL 443
           LF  IG   + GSK++  +NLG  KP      + A L  +++
Sbjct: 281 LFTPIGLPSLTGSKASKFLNLGDEKPYRSSAVYAAALHSSTI 322


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 334 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 447
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 159 DRAPLPPNRVSNETMKVVVFQRRSRET 79
           +RAPLP   V  E +  + F +R +ET
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKET 33


>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
           F-box family protein
          Length = 379

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 210 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 73
           S LC LG+  R PAD I+   L   R+    M  +V  R S + I+
Sbjct: 54  SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98


>At5g05360.2 68418.m00577 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 153

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 150 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 40
           P  P+R S      V  ++ +R+T SHL Y++ V L+
Sbjct: 20  PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56


>At5g05360.1 68418.m00578 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 163

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 150 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 40
           P  P+R S      V  ++ +R+T SHL Y++ V L+
Sbjct: 20  PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56


>At3g47910.1 68416.m05224 expressed protein low similarity to
            nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
            GI:189036; contains Pfam profiles PF04780: Protein of
            unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1290

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 198  TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 103
            T+G+ HR+ AD ++ +PLP   V + +   +V
Sbjct: 972  TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003


>At2g03000.1 68415.m00252 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 535

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 281 TPRLAVSSNGSRGSFKRRRAFPPRHHSA 198
           TPR+A +S  S G F   R F  RH SA
Sbjct: 44  TPRVAHTSMSSGGDFPDDRFFHARHQSA 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,382,628
Number of Sequences: 28952
Number of extensions: 327056
Number of successful extensions: 858
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)